Importance of incomplete lineage sorting and introgression in the origin of shared genetic variation between two closely related pines with overlapping distributions

Distributional dynamics and interspecific gene flow inPicea likiangensisandP. wilsoniitriggered by climate change on the Qinghai-Tibet Plateau

(2014) Yongshuai Sun et al.   JOURNAL OF BIOGEOGRAPHY

Climatic adaptation and ecological divergence between two closely related pine species in Southeast China

(2014) Yongfeng Zhou et al.   MOLECULAR ECOLOGY

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

(2014) Emilia Huerta-Sánchez et al.   NATURE

Genetic Introgression and Species Boundary of Two Geographically Overlapping Pine Species Revealed by Molecular Markers

(2014) Defang Zhang et al.   PLoS One

Geographic Mode of Speciation and Genomic Divergence

(2013) Jeffrey L. Feder et al.   Annual Review of Ecology Evolution and Systematics

PARALLEL EVOLUTION OF LOCAL ADAPTATION AND REPRODUCTIVE ISOLATION IN THE FACE OF GENE FLOW

(2013) Roger K. Butlin et al.   EVOLUTION

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Crossing the Species Barrier: Genomic Hotspots of Introgression between Two Highly Divergent Ciona intestinalis Species

(2013) Camille Roux et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

Understanding the origin of species with genome-scale data: modelling gene flow

(2013) Vitor Sousa et al.   NATURE REVIEWS GENETICS

Multiple Instances of Ancient Balancing Selection Shared Between Humans and Chimpanzees

(2013) E. M. Leffler et al.   SCIENCE

Sequencing Y Chromosomes Resolves Discrepancy in Time to Common Ancestor of Males Versus Females

(2013) G. D. Poznik et al.   SCIENCE

Approximate Bayesian Computation

(2013) Mikael Sunnåker et al.   PLoS Computational Biology

A Novel Approach for Choosing Summary Statistics in Approximate Bayesian Computation

(2012) S. Aeschbacher et al.   GENETICS

Constructing summary statistics for approximate Bayesian computation: semi-automatic approximate Bayesian computation

(2012) Paul Fearnhead et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Incomplete lineage sorting or secondary admixture: disentangling historical divergence from recent gene flow in the Vinous-throated parrotbill (Paradoxornis webbianus)

(2012) Yanhua Qu et al.   MOLECULAR ECOLOGY

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Distribution of living Cupressaceae reflects the breakup of Pangea

(2012) K. Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA signatures allow rapid identification of pathogens and antibiotic susceptibilities

(2012) A. K. Barczak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pleistocene Speciation in the Genus Populus (Salicaceae)

(2012) Nicholas D. Levsen et al.   SYSTEMATIC BIOLOGY

Genome-wide detection of genetic loci triggering uneven descending of gametes from a natural hybrid pine

(2012) Shuxian Li et al.   Tree Genetics & Genomes

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

(2012) Carolina Pardo-Diaz et al.   PLoS Genetics

Genome Patterns of Selection and Introgression of Haplotypes in Natural Populations of the House Mouse (Mus musculus)

(2012) Fabian Staubach et al.   PLoS Genetics

Cytoplasmic DNA variation in and genetic delimitation of Abies nephrolepis and Abies holophylla in northeastern China

(2011) Zu Yao Jiang et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Adaptive Introgression of Anticoagulant Rodent Poison Resistance by Hybridization between Old World Mice

(2011) Ying Song et al.   CURRENT BIOLOGY

POPULATION GENETIC EVIDENCE FOR COMPLEX EVOLUTIONARY HISTORIES OF FOUR HIGH ALTITUDE JUNIPER SPECIES IN THE QINGHAI-TIBETAN PLATEAU

(2011) Zhonghu Li et al.   EVOLUTION

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

(2011) A. Hobolth et al.   GENOME RESEARCH

Species delimitation and biogeography of two fir species (Abies) in central China: cytoplasmic DNA variation

(2011) J Wang et al.   HEREDITY

Genetic divergence, range expansion and possible homoploid hybrid speciation among pine species in Northeast China

(2011) G-P Ren et al.   HEREDITY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Speciation history of three closely related pines Pinus mugo (T.), P. uliginosa (N.) and P. sylvestris (L.)

(2011) WITOLD WACHOWIAK et al.   MOLECULAR ECOLOGY

Isolation and gene flow: inferring the speciation history of European house mice

(2011) LUDOVIC DUVAUX et al.   MOLECULAR ECOLOGY

A statistical explanation of MaxEnt for ecologists

(2010) Jane Elith et al.   DIVERSITY AND DISTRIBUTIONS

A comparative approach to understanding factors limiting abundance patterns and distributions in a fig tree-fig wasp mutualism

(2010) Marié Warren et al.   ECOGRAPHY

The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes

(2010) L. Chikhi et al.   GENETICS

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Evolution: Replacing Genes and Traits through Hybridization

(2009) Loren H. Rieseberg   CURRENT BIOLOGY

Demographic histories of four spruce (Picea) species of the Qinghai-Tibetan Plateau and neighboring areas inferred from multiple nuclear loci

(2009) Yuan Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

How Robust Are "Isolation with Migration" Analyses to Violations of the IM Model? A Simulation Study

(2009) J. L. Strasburg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

More introgression with less gene flow: chloroplast vs. mitochondrial DNA in thePicea asperatacomplex in China, and comparison with other Conifers

(2009) FANG K. DU et al.   MOLECULAR ECOLOGY

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation

(2008) Steven J. Phillips et al.   ECOGRAPHY

Speciation with gene flow could be common

(2008) PATRIK NOSIL   MOLECULAR ECOLOGY

Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata

(2008) Jeffrey Ross-Ibarra et al.   PLoS One

Coalescent genealogy samplers: windows into population history

(2008) Mary K. Kuhner   TRENDS IN ECOLOGY & EVOLUTION