Bacterial diversity and predicted enzymatic function in a multipurpose surface water system – from wastewater effluent discharges to drinking water production

Tuning up microbiome analysis to monitor WWTPs’ biological reactors functioning

(2020) Miguel de Celis et al.   Scientific Reports

Dynamics of bacterial communities in a river water treatment wetland

(2019) Yong Liu et al.   ANNALS OF MICROBIOLOGY

Bacterial community composition and function shift with the aggravation of water quality in a heavily polluted river

(2019) Hainan Wu et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

An integrated insight into the response of bacterial communities to anthropogenic contaminants in a river: A case study of the Wonderfonteinspruit catchment area, South Africa

(2019) K. Jordaan et al.   PLoS One

Revealing the changes of bacterial community from water source to consumers tap: A full-scale investigation in eastern city of China

(2019) Xu Ma et al.   Journal of Environmental Sciences-China

Free-living bacteria and potential bacterial pathogens in sewage treatment plants

(2018) Kailong Huang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding

(2018) A. Banerji et al.   HYDROBIOLOGIA

Shift in the microbial community composition of surface water and sediment along an urban river

(2018) Lan Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metagenomic analysis of the bacterial communities and their functional profiles in water and sediments of the Apies River, South Africa, as a function of land use

(2018) Akebe Luther King Abia et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Quantifying the Relative Contributions of Environmental Sources to the Microbial Community in an Urban Stream under Dry and Wet Weather Conditions

(2018) Darshan Baral et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial communities and potential waterborne pathogens within the typical urban surface waters

(2018) Decai Jin et al.   Scientific Reports

Revisiting the Taxonomy of the Genus Arcobacter: Getting Order From the Chaos

(2018) Alba Pérez-Cataluña et al.   Frontiers in Microbiology

Biodiversity and dynamics of cyanobacterial communities during blooms in temperate lake (Harsha Lake, Ohio, USA)

(2018) Bo Zhu et al.   HARMFUL ALGAE

Presence of active pharmaceutical ingredients in the continuum of surface and ground water used in drinking water production

(2017) Heidi Ahkola et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Comparison of two bioinformatics tools used to characterize the microbial diversity and predictive functional attributes of microbial mats from Lake Obersee, Antarctica

(2017) Hyunmin Koo et al.   JOURNAL OF MICROBIOLOGICAL METHODS

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Raw Water Quality and Pretreatment in Managed Aquifer Recharge for Drinking Water Production in Finland

(2017) Petri Jokela et al.   Water

Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia

(2016) Warish Ahmed et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Wastewater Treatment and Reclamation: A Review of Pulp and Paper Industry Practices and Opportunities

(2016) Martin A. Hubbe et al.   BioResources

Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters

(2016) Arda Gülay et al.   ISME Journal

Diversity of ribosomal 16S DNA- and RNA-based bacterial community in an office building drinking water system

(2016) J. Inkinen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Contamination risk of raw drinking water caused by PFOA sources along a river reach in south-western Finland

(2016) Maiju Happonen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The effects of manganese oxide octahedral molecular sieve chitosan microspheres on sludge bacterial community structures during sewage biological treatment

(2016) Fei Pan et al.   Scientific Reports

Biological Stability of Drinking Water: Controlling Factors, Methods, and Challenges

(2016) Emmanuelle I. Prest et al.   Frontiers in Microbiology

Quantifying the effects of geographical and environmental factors on distribution of stream bacterioplankton within nature reserves of Fujian, China

(2015) Yongming Wang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Changes in bacterial and eukaryotic communities during sewage decomposition in Mississippi river water

(2015) Asja Korajkic et al.   WATER RESEARCH

Stream microbial diversity in response to environmental changes: review and synthesis of existing research

(2015) Lydia H. Zeglin   Frontiers in Microbiology

Effects of water stratification and mixing on microbial community structure in a subtropical deep reservoir

(2014) Zheng Yu et al.   Scientific Reports

Choosing and using diversity indices: insights for ecological applications from the German Biodiversity Exploratories

(2014) E. Kathryn Morris et al.   Ecology and Evolution

Detection of Fecal Bacteria and Source Tracking Identifiers in Environmental Waters Using rRNA-Based RT-qPCR and rDNA-Based qPCR Assays

(2013) Tarja Pitkänen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Occurrence of thermotolerant Campylobacter spp. and adenoviruses in Finnish bathing waters and purified sewage effluents

(2013) Anna-Maria Hokajärvi et al.   JOURNAL OF WATER AND HEALTH

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Pathogenic Bacteria in Sewage Treatment Plants as Revealed by 454 Pyrosequencing

(2011) Lin Ye et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bacterial community composition in low-flowing river water with different sources of pollutants

(2011) Abasiofiok Mark Ibekwe et al.   FEMS MICROBIOLOGY ECOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY