Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

(2016) Daryl M Gohl et al.   NATURE BIOTECHNOLOGY

Contamination with bacterial zoonotic pathogen genes in U.S. streams influenced by varying types of animal agriculture

(2016) Sheridan K. Haack et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metagenomic insights into ultraviolet disinfection effects on antibiotic resistome in biologically treated wastewater

(2016) Qing Hu et al.   WATER RESEARCH

Current Status of Marker Genes of Bacteroides and Related Taxa for Identifying Sewage Pollution in Environmental Waters

(2016) Warish Ahmed et al.   Water

Microbial Community Profiles in Wastewaters from Onsite Wastewater Treatment Systems Technology

(2016) Łukasz Jałowiecki et al.   PLoS One

Comparison of Methods to Identify Pathogens and Associated Virulence Functional Genes in Biosolids from Two Different Wastewater Treatment Facilities in Canada

(2016) Etienne Yergeau et al.   PLoS One

Meta-omics approaches to understand and improve wastewater treatment systems

(2015) Elisa Rodríguez et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Species sorting and seasonal dynamics primarily shape bacterial communities in the Upper Mississippi River

(2015) Christopher Staley et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Meta-omics approaches to understand and improve wastewater treatment systems

(2015) Elisa Rodríguez et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Bacterial Pathogens and Community Composition in Advanced Sewage Treatment Systems Revealed by Metagenomics Analysis Based on High-Throughput Sequencing

(2015) Xin Lu et al.   PLoS One

Alternative Fecal Indicators and Their Empirical Relationships with Enteric Viruses, Salmonella enterica, and Pseudomonas aeruginosa in Surface Waters of a Tropical Urban Catchment

(2014) L. Liang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Shifts in microbial community in response to dissolved oxygen levels in activated sludge

(2014) Trilok Chandra Yadav et al.   BIORESOURCE TECHNOLOGY

Correlation between microbial community and granule conductivity in anaerobic bioreactors for brewery wastewater treatment

(2014) Pravin Malla Shrestha et al.   BIORESOURCE TECHNOLOGY

Molecular Analysis for Screening Human Bacterial Pathogens in Municipal Wastewater Treatment and Reuse

(2014) Rajkumari Kumaraswamy et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Comparison of the Microbial Community Structures of Untreated Wastewaters from Different Geographic Locales

(2013) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Tracking human sewage microbiome in a municipal wastewater treatment plant

(2013) Lin Cai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A Generalized Kruskal-Wallis Test Incorporating Group Uncertainty with Application to Genetic Association Studies

(2013) Elif F. Acar et al.   BIOMETRICS

Detecting Human Bacterial Pathogens in Wastewater Treatment Plants by a High-Throughput Shotgun Sequencing Technique

(2013) Lin Cai et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Human health implications of clinically relevant bacteria in wastewater habitats

(2013) Ana Rita Varela et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Detection and characterization of human pathogenic viruses circulating in community wastewater using multi target microarrays and polymerase chain reaction

(2013) Mark V. M. Wong et al.   JOURNAL OF WATER AND HEALTH

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study Designs

(2013) Orna Mizrahi-Man et al.   PLoS One

Potential Human Pathogenic Bacteria in a Mixed Urban Watershed as Revealed by Pyrosequencing

(2013) A. Mark Ibekwe et al.   PLoS One

Effects of Bacterial, Chemical, Physical and Meteorological Variables on Virus Removal by a Wastewater Treatment Plant

(2013) A. Carducci et al.   Food and Environmental Virology

High-speed microbial community profiling

(2012) Daniel H Haft et al.   NATURE METHODS

METAGENassist: a comprehensive web server for comparative metagenomics

(2012) D. Arndt et al.   NUCLEIC ACIDS RESEARCH

Bacterial Community Dynamics in Full-Scale Activated Sludge Bioreactors: Operational and Ecological Factors Driving Community Assembly and Performance

(2012) Alexis Valentín-Vargas et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

Pathogenic Bacteria in Sewage Treatment Plants as Revealed by 454 Pyrosequencing

(2011) Lin Ye et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

(2011) Tong Zhang et al.   ISME Journal

Climate change: present and future risks to health, and necessary responses

(2011) A. J. McMichael et al.   JOURNAL OF INTERNAL MEDICINE

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Toward an Efficient Method of Identifying Core Genes for Evolutionary and Functional Microbial Phylogenies

(2011) Nicola Segata et al.   PLoS One

Leptospiraas an emerging pathogen: a review of its biology, pathogenesis and host immune responses

(2010) Karen V Evangelista et al.   Future Microbiology

Arcobacter defluvii sp. nov., isolated from sewage samples

(2010) L. Collado et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing

(2010) Pei-Yuan Qian et al.   ISME Journal

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

Pyrosequencing of the 16S rRNA gene to reveal bacterial pathogen diversity in biosolids

(2010) Kyle Bibby et al.   WATER RESEARCH

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent

(2009) S. L. McLellan et al.   ENVIRONMENTAL MICROBIOLOGY

Evaluation ofLegionella pneumophilacontamination in Italian hotel water systems by quantitative real-time PCR and culture methods

(2009) Sa. Bonetta et al.   JOURNAL OF APPLIED MICROBIOLOGY

Molecular Diversity of a North Carolina Wastewater Treatment Plant as Revealed by Pyrosequencing

(2008) N. Sanapareddy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Sorption and high dynamics of micropollutants in sewers

(2008) C. Ort et al.   WATER SCIENCE AND TECHNOLOGY