The chromosome-scale genome of Magnolia officinalis provides insight into the evolutionary position of magnoliids

The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids

(2021) Shanshan Dong et al.   Horticulture Research

Insights into triterpene synthesis and unsaturated fatty-acid accumulation provided by chromosomal-level genome analysis of Akebia trifoliata subsp. australis

(2021) Hui Huang et al.   Horticulture Research

Preferential gene retention increases the robustness of cold regulation in Brassicaceae and other plants after polyploidization

(2020) Xiao-Ming Song et al.   Horticulture Research

The Litsea genome and the evolution of the laurel family

(2020) Yi-Cun Chen et al.   Nature Communications

The Chimonanthus salicifolius genome provides insight into magnoliid evolution and flavonoid biosynthesis

(2020) Qundan Lv et al.   PLANT JOURNAL

The ancient wave of polyploidization events in flowering plants and their facilitated adaptation to environmental stress

(2020) Liangsheng Zhang et al.   PLANT CELL AND ENVIRONMENT

The Phoebe genome sheds light on the evolution of magnoliids

(2020) Shi-Pin Chen et al.   Horticulture Research

Transposable elements drive rapid phenotypic variation in Capsella rubella

(2019) Xiao-Min Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lignin biosynthesis and its integration into metabolism

(2019) Ruben Vanholme et al.   CURRENT OPINION IN BIOTECHNOLOGY

A review of the phytochemistry and pharmacological activities of Magnoliae officinalis cortex

(2019) Hanyan Luo et al.   JOURNAL OF ETHNOPHARMACOLOGY

The repetitive DNA landscape in Avena (Poaceae): chromosome and genome evolution defined by major repeat classes in whole-genome sequence reads

(2019) Qing Liu et al.   BMC PLANT BIOLOGY

Identification of minor lignans, alkaloids, and phenylpropanoid glycosides in Magnolia officinalis by HPLC‒DAD‒QTOF-MS/MS

(2019) Keke Guo et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

(2019) Martha Rendón-Anaya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis

(2019) Lisong Hu et al.   Nature Communications

Chromosome-level genome assembly of golden pompano (Trachinotus ovatus) in the family Carangidae

(2019) Dian-Chang Zhang et al.   Scientific Data

Fast and accurate long-read assembly with wtdbg2

(2019) Jue Ruan et al.   NATURE METHODS

Identification and characterization of terpene synthase genes accounting for volatile terpene emissions in flowers of Freesia x hybrida

(2018) Fengzhan Gao et al.   JOURNAL OF EXPERIMENTAL BOTANY

HMMER web server: 2018 update

(2018) Simon C Potter et al.   NUCLEIC ACIDS RESEARCH

The pomegranate (Punica granatum L.) genome provides insights into fruit quality and ovule developmental biology

(2018) Zhaohe Yuan et al.   PLANT BIOTECHNOLOGY JOURNAL

Rapid, simple and potentially universal method for DNA extraction from Opuntia spp. fresh cladode tissues suitable for PCR amplification

(2018) Joana Raimundo et al.   MOLECULAR BIOLOGY REPORTS

wgd—simple command line tools for the analysis of ancient whole-genome duplications

(2018) Arthur Zwaenepoel et al.   BIOINFORMATICS

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Biological activity and toxicity of the Chinese herb Magnolia officinalis Rehder & E. Wilson (Houpo) and its constituents

(2017) Mélanie Poivre et al.   Journal of Zhejiang University-SCIENCE B

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Advances on Semisynthesis, Total Synthesis, and Structure-Activity Relationships of Honokiol and Magnolol Derivatives

(2016) Chun Yang et al.   MINI-REVIEWS IN MEDICINAL CHEMISTRY

Using intron position conservation for homology-based gene prediction

(2016) Jens Keilwagen et al.   NUCLEIC ACIDS RESEARCH

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The Biosynthetic Pathways of Tanshinones and Phenolic Acids in Salvia miltiorrhiza

(2015) Xiao-Hui Ma et al.   MOLECULES

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Floral volatiles: from biosynthesis to function

(2014) JOËLLE K. MUHLEMANN et al.   PLANT CELL AND ENVIRONMENT

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

MagnoliaExtract (BL153) Ameliorates Kidney Damage in a High Fat Diet-Induced Obesity Mouse Model

(2013) Wenpeng Cui et al.   Oxidative Medicine and Cellular Longevity

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Therapeutic applications of compounds in the Magnolia family

(2011) Young-Jung Lee et al.   PHARMACOLOGY & THERAPEUTICS

Diversification of P450 Genes During Land Plant Evolution

(2010) Masaharu Mizutani et al.   Annual Review of Plant Biology

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap

(2008) A. D. Johnson et al.   BIOINFORMATICS

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY