The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

Callose and β-1,3-glucanase inhibit Phytophthora cinnamomi in a resistant avocado rootstock

(2018) N. van den Berg et al.   PLANT PATHOLOGY

Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics

(2018) David Sankoff et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Application of genomic tools to avocado (Persea americana) breeding: SNP discovery for genotyping and germplasm characterization

(2018) D.N. Kuhn et al.   SCIENTIA HORTICULTURAE

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

(2017) Jarkko Salojärvi et al.   NATURE GENETICS

Soft mechanical stimulation induces a defense response against Botrytis cinerea in strawberry

(2017) Rodrigo Hernán Tomas-Grau et al.   PLANT CELL REPORTS

IDL6-HAE/HSL2 impacts pectin degradation and resistance to Pseudomonas syringae pv tomato DC3000 in Arabidopsis leaves

(2017) Xin Wang et al.   PLANT JOURNAL

A first insight into the involvement of phytohormones pathways in coffee resistance and susceptibility to Colletotrichum kahawae

(2017) Inês Diniz et al.   PLoS One

Transcriptomic Analysis of Avocado Hass (Persea americana Mill) in the Interaction System Fruit-Chitosan-Colletotrichum

(2017) Luis-Ángel Xoca-Orozco et al.   Frontiers in Plant Science

Overexpression of ERF1-V from Haynaldia villosa Can Enhance the Resistance of Wheat to Powdery Mildew and Increase the Tolerance to Salt and Drought Stresses

(2017) Liping Xing et al.   Frontiers in Plant Science

Comparative transcriptome analysis unveils the tolerance mechanisms of Citrus hystrix in response to ‘Candidatus Liberibacter asiaticus’ infection

(2017) Yan Hu et al.   PLoS One

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Effect of prior drought and pathogen stress onArabidopsistranscriptome changes to caterpillar herbivory

(2016) Nelson H. Davila Olivas et al.   NEW PHYTOLOGIST

Eigenanalysis of SNP data with an identity by descent interpretation

(2016) Xiuwen Zheng et al.   THEORETICAL POPULATION BIOLOGY

The number of known plants species in the world and its annual increase

(2016) MAARTEN J.M. CHRISTENHUSZ et al.   Phytotaxa

Glycosylation Is a Major Regulator of Phenylpropanoid Availability and Biological Activity in Plants

(2016) Julien Le Roy et al.   Frontiers in Plant Science

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

A comparison of the transcriptome of Drosophila melanogaster in response to entomopathogenic fungus, ionizing radiation, starvation and cold shock

(2015) Alexey Moskalev et al.   BMC GENOMICS

The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds

(2015) Alexander Suh et al.   PLOS BIOLOGY

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

(2014) Tae-Ho Lee et al.   BMC GENOMICS

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Wheat Ethylene Response Factor Transcription Factor PATHOGEN-INDUCED ERF1 Mediates Host Responses to Both the Necrotrophic Pathogen Rhizoctonia cerealis and Freezing Stresses

(2014) X. Zhu et al.   PLANT PHYSIOLOGY

Phylotranscriptomic analysis of the origin and early diversification of land plants

(2014) Norman J. Wickett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

(2014) Liping Zeng et al.   Nature Communications

Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses

(2013) Sabrina Humbert et al.   BMC GENOMICS

Estimating Individual Admixture Proportions from Next Generation Sequencing Data

(2013) Line Skotte et al.   GENETICS

The Amborella Genome and the Evolution of Flowering Plants

(2013) et al.   SCIENCE

Public attitudes to science in South Africa

(2013) Vijay Reddy et al.   SOUTH AFRICAN JOURNAL OF SCIENCE

Unified modeling of gene duplication, loss, and coalescence using a locus tree

(2012) M. D. Rasmussen et al.   GENOME RESEARCH

A genome triplication associated with early diversification of the core eudicots

(2012) Yuannian Jiao et al.   GENOME BIOLOGY

Angiosperm phylogeny: 17 genes, 640 taxa

(2011) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

BadiRate: estimating family turnover rates by likelihood-based methods

(2011) P. Librado et al.   BIOINFORMATICS

Identification of avocado (Persea americana) root proteins induced by infection with the oomycete Phytophthora cinnamomi using a proteomic approach

(2011) Carlos H. Acosta-Muñiz et al.   PHYSIOLOGIA PLANTARUM

Phosphite primed defence responses and enhanced expression of defence genes in Arabidopsis thaliana infected with Phytophthora cinnamomi

(2011) L. Eshraghi et al.   PLANT PATHOLOGY

The Genetics of Lignin Biosynthesis: Connecting Genotype to Phenotype

(2010) Nicholas D. Bonawitz et al.   Annual Review of Genetics

Don't forget the ancestral polymorphisms

(2010) D Charlesworth   HEREDITY

Callose Deposition: A Multifaceted Plant Defense Response

(2010) Estrella Luna et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition

(2009) Michael Freeling   Annual Review of Plant Biology

Insecticidal Activity of Basil Oil, trans-Anethole, Estragole, and Linalool to Adult Fruit Flies of Ceratitis capitata, Bactrocera dorsalis, and Bactrocera cucurbitae

(2009) Chiou Ling Chang et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

Quantitative Prediction of Molecular Clock and Ka/Ks at Short Timescales

(2009) G. I. Peterson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

Persea americana (avocado): bringing ancient flowers to fruit in the genomics era

(2008) André S. Chanderbali et al.   BIOESSAYS

Preservation of duplicate genes by originalization

(2008) Cheng Xue et al.   GENETICA

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

(2008) H. Tang et al.   GENOME RESEARCH

Tracing the Geographic Origins of Major Avocado Cultivars

(2008) H. Chen et al.   JOURNAL OF HEREDITY

The Value of Nonmodel Genomes and an Example Using SynMap Within CoGe to Dissect the Hexaploidy that Predates the Rosids

(2008) Eric Lyons et al.   Tropical Plant Biology