Integrated analysis of glycan and RNA in single cells

SUGAR-seq enables simultaneous detection of glycans, epitopes, and the transcriptome in single cells

(2021) Conor J. Kearney et al.   Science Advances

SSEA-1-positive fibronectin is secreted by cells deviated from the undifferentiated state of human induced pluripotent stem cells

(2020) Tomoko Watanabe et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Integrative single-cell analysis

(2019) Tim Stuart et al.   NATURE REVIEWS GENETICS

Neural stem cells: origin, heterogeneity and regulation in the adult mammalian brain

(2019) Kirsten Obernier et al.   DEVELOPMENT

Photoactivable elimination of tumorigenic human induced pluripotent stem cells using a lectin-doxorubicin prodrug conjugate

(2019) Johann Dion et al.   CHEMBIOCHEM

Glycan Markers of Human Stem Cells Assigned with Beam Search Arrays

(2019) Nian Wu et al.   MOLECULAR & CELLULAR PROTEOMICS

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Establishment and characterization of a fucosylated α-fetoprotein-specific monoclonal antibody: a potential application for clinical research

(2019) Yuriko Egashira et al.   Scientific Reports

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

(2018) Kelly Street et al.   BMC GENOMICS

Cancer glycan epitopes: biosynthesis, structure and function

(2018) Oliver M T Pearce   GLYCOBIOLOGY

Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding

(2018) Alexander B. Rosenberg et al.   SCIENCE

Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs

(2018) Tetsutaro Hayashi et al.   Nature Communications

Current Technologies for Complex Glycoproteomics and Their Applications to Biology/Disease-Driven Glycoproteomics

(2018) Hisashi Narimatsu et al.   JOURNAL OF PROTEOME RESEARCH

Multiplexed quantification of proteins and transcripts in single cells

(2017) Vanessa M Peterson et al.   NATURE BIOTECHNOLOGY

Simultaneous epitope and transcriptome measurement in single cells

(2017) Marlon Stoeckius et al.   NATURE METHODS

Erratum: Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

(2017) Todd M Gierahn et al.   NATURE METHODS

Biological roles of glycans

(2016) Ajit Varki   GLYCOBIOLOGY

destiny: diffusion maps for large-scale single-cell data in R

(2015) Philipp Angerer et al.   BIOINFORMATICS

Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical Analyses

(2015) Etienne A. Thévenot et al.   JOURNAL OF PROTEOME RESEARCH

Elimination of Tumorigenic Human Pluripotent Stem Cells by a Recombinant Lectin-Toxin Fusion Protein

(2015) Hiroaki Tateno et al.   Stem Cell Reports

A Cancer-specific Monoclonal Antibody Recognizes the Aberrantly Glycosylated Podoplanin

(2014) Yukinari Kato et al.   Scientific Reports

rBC2LCN, a new probe for live cell imaging of human pluripotent stem cells

(2013) Yasuko Onuma et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Lectin microarrays: concept, principle and applications

(2013) Jun Hirabayashi et al.   CHEMICAL SOCIETY REVIEWS

Dot by dot: analyzing the glycome using lectin microarrays

(2013) João P Ribeiro et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Lefty1 and Lefty2 Control the Balance Between Self-Renewal and Pluripotent Differentiation of Mouse Embryonic Stem Cells

(2013) Dae-Kwan Kim et al.   STEM CELLS AND DEVELOPMENT

Podocalyxin Is a Glycoprotein Ligand of the Human Pluripotent Stem Cell-Specific Probe rBC2LCN

(2013) Hiroaki Tateno et al.   Stem Cells Translational Medicine

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

A novel antibody for human induced pluripotent stem cells and embryonic stem cells recognizes a type of keratan sulfate lacking oversulfated structures

(2012) K. Kawabe et al.   GLYCOBIOLOGY

Structural and Quantitative Evidence for Dynamic Glycome Shift on Production of Induced Pluripotent Stem Cells

(2012) Kayo Hasehira et al.   MOLECULAR & CELLULAR PROTEOMICS

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Lectin Microarray Reveals Binding Profiles of Lactobacillus casei Strains in a Comprehensive Analysis of Bacterial Cell Wall Polysaccharides

(2011) Emi Yasuda et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structure and binding analysis of Polyporus squamosus lectin in complex with the Neu5Acα2-6Galβ1-4GlcNAc human-type influenza receptor

(2011) Renuka Kadirvelraj et al.   GLYCOBIOLOGY

Glycome Diagnosis of Human Induced Pluripotent Stem Cells Using Lectin Microarray

(2011) Hiroaki Tateno et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An antibody against SSEA-5 glycan on human pluripotent stem cells enables removal of teratoma-forming cells

(2011) Chad Tang et al.   NATURE BIOTECHNOLOGY

A TNF-like Trimeric Lectin Domain from Burkholderia cenocepacia with Specificity for Fucosylated Human Histo-Blood Group Antigens

(2010) Ondřej Šulák et al.   STRUCTURE

A strategy for discovery of cancer glyco-biomarkers in serum using newly developed technologies for glycoproteomics

(2009) Hisashi Narimatsu et al.   FEBS Journal

Glycomics Profiling of Chinese Hamster Ovary Cell Glycosylation Mutants RevealsN-Glycans of a Novel Size and Complexity

(2009) Simon J. North et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

HIV-1 and microvesicles from T cells share a common glycome, arguing for a common origin

(2009) Lakshmi Krishnamoorthy et al.   Nature Chemical Biology