Machine learning-assisted single-cell Raman fingerprinting for in situ and nondestructive classification of prokaryotes

Applying machine learning to balance performance and stability of high energy density materials

(2021) Xiaona Huang et al.   iScience

Combination of an Artificial Intelligence Approach and Laser Tweezers Raman Spectroscopy for Microbial Identification

(2020) Weilai Lu et al.   ANALYTICAL CHEMISTRY

Raman spectroscopic signatures of carotenoids and polyenes enable label-free visualization of microbial distributions within pink biofilms

(2020) Hiroto Horiue et al.   Scientific Reports

Diversity, ecology and evolution of Archaea

(2020) Brett J. Baker et al.   Nature Microbiology

Microbial single-cell omics: the crux of the matter

(2020) Anne-Kristin Kaster et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Can cells maintain their bioactivity in ionic liquids? A novel single-cell assessment by Raman microspectroscopy

(2019) Ami Matsuda et al.   JOURNAL OF RAMAN SPECTROSCOPY

Intra and inter species variability of single-cell innate fluorescence signature of microbial cell

(2019) Yutaka Yawata et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Inhomogeneous Molecular Distributions and Cytochrome Types and Redox States in Fungal Cells Revealed by Raman Hyperspectral Imaging Using Multivariate Curve Resolution–Alternating Least Squares

(2019) Mitsuru Yasuda et al.   ANALYTICAL CHEMISTRY

Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning

(2019) Chi-Sing Ho et al.   Nature Communications

Algorithm for optimal denoising of Raman spectra

(2018) Sinead J. Barton et al.   Analytical Methods

Culture-free Antibiotic-susceptibility Determination From Single-bacterium Raman Spectra

(2018) A. Novelli-Rousseau et al.   Scientific Reports

Cultivation-Free Raman Spectroscopic Investigations of Bacteria

(2017) Björn Lorenz et al.   TRENDS IN MICROBIOLOGY

Metabolic network analysis reveals microbial community interactions in anammox granules

(2017) Christopher E. Lawson et al.   Nature Communications

The bright side of microbial dark matter: lessons learned from the uncultivated majority

(2016) Lindsey Solden et al.   CURRENT OPINION IN MICROBIOLOGY

Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

(2016) Janine Kamke et al.   Microbiome

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

A new antibiotic kills pathogens without detectable resistance

(2015) Losee L. Ling et al.   NATURE

When cells divide: Label-free multimodal spectral imaging for exploratory molecular investigation of living cells during cytokinesis

(2015) Jen-Fang Hsu et al.   Scientific Reports

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

(2015) Young-Mo Kim et al.   Frontiers in Microbiology

In Situ Detection of Antibiotic Amphotericin B Produced in Streptomyces nodosus Using Raman Microspectroscopy

(2014) Rimi Miyaoka et al.   Marine Drugs

Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa

(2014) Liang Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biosynthesis of archaeal membrane ether lipids

(2014) Samta Jain   Frontiers in Microbiology

Correlation of Carotenoid Accumulation with Aggregation and Biofilm Development in Rhodococcus sp. SD-74

(2013) Yi-Ting Zheng et al.   ANALYTICAL CHEMISTRY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Bacterioruberin and salinixanthin carotenoids of extremely halophilic Archaea and Bacteria: A Raman spectroscopic study

(2013) J. Jehlička et al.   SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY

Disentangling Dynamic Changes of Multiple Cellular Components during the Yeast Cell Cycle by in Vivo Multivariate Raman Imaging

(2012) Chuan-Keng Huang et al.   ANALYTICAL CHEMISTRY

Stable Isotope-Labeled Raman Imaging Reveals Dynamic Proteome Localization to Lipid Droplets in Single Fission Yeast Cells

(2012) Hemanth Nag Noothalapati Venkata et al.   CHEMISTRY & BIOLOGY

Single cell genomics: an individual look at microbes

(2012) Ramunas Stepanauskas   CURRENT OPINION IN MICROBIOLOGY

The genome of the ammonia-oxidizingCandidatusNitrososphaera gargensis: insights into metabolic versatility and environmental adaptations

(2012) Anja Spang et al.   ENVIRONMENTAL MICROBIOLOGY

In vivo multimode Raman imaging reveals concerted molecular composition and distribution changes during yeast cell cycle

(2011) Chuan-Keng Huang et al.   CHEMICAL COMMUNICATIONS

Cultivation of methanogenic community from subseafloor sediments using a continuous-flow bioreactor

(2011) Hiroyuki Imachi et al.   ISME Journal

Leucine pools in Escherichia coli biofilm discovered by Raman imaging

(2011) Hemanth Nag Noothalapati Venkata et al.   JOURNAL OF RAMAN SPECTROSCOPY

Imaging of EdU, an Alkyne-Tagged Cell Proliferation Probe, by Raman Microscopy

(2011) Hiroyuki Yamakoshi et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The archaeal cell envelope

(2011) Sonja-Verena Albers et al.   NATURE REVIEWS MICROBIOLOGY

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

(2011) M. Tourna et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sulfur-metabolizing bacterial populations in microbial mats of the Nakabusa hot spring, Japan

(2011) Kyoko Kubo et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Domain-level identification and quantification of relative prokaryotic cell abundance in microbial communities by Micro-FTIR spectroscopy

(2011) Motoko Igisu et al.   Environmental Microbiology Reports

The influence of intracellular storage material on bacterial identification by means of Raman spectroscopy

(2010) Valerian Ciobotă et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Use of Ichip for High-Throughput In Situ Cultivation of "Uncultivable" Microbial Species

(2010) D. Nichols et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Raman spectroscopy as a potential method for the detection of extremely halophilic archaea embedded in halite in terrestrial and possibly extraterrestrial samples

(2009) Sergiu Fendrihan et al.   JOURNAL OF RAMAN SPECTROSCOPY

Micro-FTIR spectroscopic signatures of Bacterial lipids in Proterozoic microfossils

(2009) Motoko Igisu et al.   PRECAMBRIAN RESEARCH

Evidence that Ammonia-Oxidizing Archaea are More Abundant than Ammonia-Oxidizing Bacteria in Semiarid Soils of Northern Arizona, USA

(2008) Karen L. Adair et al.   MICROBIAL ECOLOGY

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques

(2008) Rudolf Amann et al.   NATURE REVIEWS MICROBIOLOGY