A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit

Backbone and sidechain NMR assignments for the ribosome maturation factor RimP from Escherichia coli

(2020) Andreas Schedlbauer et al.   Biomolecular NMR Assignments

Ribosomal maturation factor (RimP) is essential for survival of nontuberculous mycobacteria Mycobacterium fortuitum under in vitro acidic stress conditions

(2019) Poonam et al.   3 Biotech

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

(2019) Dorothee Liebschner et al.   Acta Crystallographica Section D-Structural Biology

RbfA and IF3 couple ribosome biogenesis and translation initiation to increase stress tolerance

(2019) Indra Mani Sharma et al.   NUCLEIC ACIDS RESEARCH

Structure of a eukaryotic cytoplasmic pre‐40S ribosomal subunit

(2018) Alain Scaiola et al.   EMBO JOURNAL

Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION

(2018) Takanori Nakane et al.   eLife

Ribosomal biogenesis as an emerging target of neurodevelopmental pathologies

(2018) Michal Hetman et al.   JOURNAL OF NEUROCHEMISTRY

Visualizing late states of human 40S ribosomal subunit maturation

(2018) Michael Ameismeier et al.   NATURE

The ribosomal maturation factor P from Mycobacterium smegmatis facilitates the ribosomal biogenesis by binding to the small ribosomal protein S12

(2018) Tinyi Chu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

New tools for automated high-resolution cryo-EM structure determination in RELION-3

(2018) Jasenko Zivanov et al.   eLife

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

Addressing preferred specimen orientation in single-particle cryo-EM through tilting

(2017) Yong Zi Tan et al.   NATURE METHODS

RsgA couples the maturation state of the 30S ribosomal decoding center to activation of its GTPase pocket

(2017) Jorge Pedro López-Alonso et al.   NUCLEIC ACIDS RESEARCH

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

(2017) Aida Razi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Xplor-NIH for molecular structure determination from NMR and other data sources

(2017) Charles D. Schwieters et al.   PROTEIN SCIENCE

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

(2017) Thomas D. Goddard et al.   PROTEIN SCIENCE

Probing the mechanisms underlying human diseases in making ribosomes

(2016) K. I. Farley et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

CcpNmr AnalysisAssign: a flexible platform for integrated NMR analysis

(2016) Simon P. Skinner et al.   JOURNAL OF BIOMOLECULAR NMR

Gctf: Real-time CTF determination and correction

(2016) Kai Zhang   JOURNAL OF STRUCTURAL BIOLOGY

The impact of recent improvements in cryo-electron microscopy technology on the understanding of bacterial ribosome assembly

(2016) Aida Razi et al.   NUCLEIC ACIDS RESEARCH

Chemical modulators of ribosome biogenesis as biological probes

(2015) Jonathan M Stokes et al.   Nature Chemical Biology

In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state

(2015) Jennifer L. McGinnis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy

(2014) Woonghee Lee et al.   BIOINFORMATICS

Molecular mechanics of 30S subunit head rotation

(2014) Srividya Mohan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A combined quantitative mass spectrometry and electron microscopy analysis of ribosomal 30S subunit assembly in E. coli

(2014) Dipali G Sashital et al.   eLife

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM and general features of the assembly process

(2013) Qiang Guo et al.   NUCLEIC ACIDS RESEARCH

Using chemical shift perturbation to characterise ligand binding

(2013) Mike P. Williamson   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Escherichia coli rimM and yjeQ null strains accumulate immature 30S subunits of similar structure and protein complement

(2013) V. Leong et al.   RNA

Structural Insights into Methyltransferase KsgA Function in 30S Ribosomal Subunit Biogenesis

(2012) Daniel Boehringer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Versatile and Efficient High-Throughput Cloning Tool for Structural Biology

(2011) Eric R. Geertsma et al.   BIOCHEMISTRY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

RsgA releases RbfA from 30S ribosome during a late stage of ribosome biosynthesis

(2010) Simon Goto et al.   EMBO JOURNAL

The Effect of Ribosome Assembly Cofactors on In Vitro 30S Subunit Reconstitution

(2010) Anne E. Bunner et al.   JOURNAL OF MOLECULAR BIOLOGY

Visualizing Ribosome Biogenesis: Parallel Assembly Pathways for the 30SSubunit

(2010) Anke M. Mulder et al.   SCIENCE

Fundamental Aspects of Protein−Protein Association Kinetics

(2009) G. Schreiber et al.   CHEMICAL REVIEWS

TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

(2009) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Inhibition of Bacterial Ribosome Assembly: a Suitable Drug Target?

(2009) B. A. Maguire   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

(2008) Tadepalli Adilakshmi et al.   NATURE

P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation

(2007) Berk Hess   Journal of Chemical Theory and Computation

Assembly of the 5′ and 3′ Minor Domains of 16S Ribosomal RNA as Monitored by Tethered Probing from Ribosomal Protein S20

(2007) Laura M. Dutca et al.   JOURNAL OF MOLECULAR BIOLOGY