Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath
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Title
Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath
Authors
Keywords
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Journal
Science Advances
Volume 7, Issue 38, Pages -
Publisher
American Association for the Advancement of Science (AAAS)
Online
2021-09-16
DOI
10.1126/sciadv.abi4360
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Note: Only part of the references are listed.- Temporal dissection of an enhancer cluster reveals distinct temporal and functional contributions of individual elements
- (2021) Henry F. Thomas et al. MOLECULAR CELL
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- (2021) Naoki Kubo et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Interrogation of enhancer function by enhancer-targeting CRISPR epigenetic editing
- (2020) Kailong Li et al. Nature Communications
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- (2020) Jill E. Moore et al. NATURE
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- (2020) Nives Pećina-Šlaus et al. Frontiers in Molecular Biosciences
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- (2020) Hannah K. Long et al. Cell Stem Cell
- Cell-type-specific 3D epigenomes in the developing human cortex
- (2020) Michael Song et al. NATURE
- A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens
- (2019) Molly Gasperini et al. CELL
- MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
- (2019) Ivan Juric et al. PLoS Computational Biology
- Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling
- (2019) Michael P. Meers et al. Epigenetics & Chromatin
- CUT&Tag for efficient epigenomic profiling of small samples and single cells
- (2019) Hatice S. Kaya-Okur et al. Nature Communications
- Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations
- (2019) Charles P. Fulco et al. NATURE GENETICS
- Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements
- (2019) Josh Tycko et al. Nature Communications
- The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription
- (2018) Olga Mikhaylichenko et al. GENES & DEVELOPMENT
- Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells
- (2017) Shiqi Xie et al. MOLECULAR CELL
- Discovery of stimulation-responsive immune enhancers with CRISPR activation
- (2017) Dimitre R. Simeonov et al. NATURE
- CRISPR–Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome
- (2017) Tyler S Klann et al. NATURE BIOTECHNOLOGY
- GuideScan software for improved single and paired CRISPR guide RNA design
- (2017) Alexendar R Perez et al. NATURE BIOTECHNOLOGY
- Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
- (2017) Maxwell R Mumbach et al. NATURE GENETICS
- A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells
- (2017) Yarui Diao et al. NATURE METHODS
- HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
- (2017) Ivan V Kulakovskiy et al. NUCLEIC ACIDS RESEARCH
- Complementary information derived from CRISPR Cas9 mediated gene deletion and suppression
- (2017) Joseph Rosenbluh et al. Nature Communications
- A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
- (2016) Britt Adamson et al. CELL
- Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq
- (2016) Rongxin Fang et al. CELL RESEARCH
- CRISPR Interference Efficiently Induces Specific and Reversible Gene Silencing in Human iPSCs
- (2016) Mohammad A. Mandegar et al. Cell Stem Cell
- A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening
- (2016) Yarui Diao et al. GENOME RESEARCH
- Local regulation of gene expression by lncRNA promoters, transcription and splicing
- (2016) Jesse M. Engreitz et al. NATURE
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- (2016) Frank Soldner et al. NATURE
- High-throughput mapping of regulatory DNA
- (2016) Nisha Rajagopal et al. NATURE BIOTECHNOLOGY
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Optimizing sgRNA position markedly improves the efficiency of CRISPR/dCas9-mediated transcriptional repression
- (2016) Aliaksandra Radzisheuskaya et al. NUCLEIC ACIDS RESEARCH
- High-resolution interrogation of functional elements in the noncoding genome
- (2016) N. E. Sanjana et al. SCIENCE
- Systematic mapping of functional enhancer–promoter connections with CRISPR interference
- (2016) Charles P. Fulco et al. SCIENCE
- BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis
- (2015) Matthew C. Canver et al. NATURE
- Enhancer–core-promoter specificity separates developmental and housekeeping gene regulation
- (2014) Muhammad A. Zabidi et al. NATURE
- Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library
- (2013) Hiroko Koike-Yusa et al. NATURE BIOTECHNOLOGY
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- A functional family-wide screening of SP/KLF proteins identifies a subset of suppressors ofKRAS-mediated cell growth
- (2011) Martin E. Fernandez-Zapico et al. BIOCHEMICAL JOURNAL
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Genomic views of distant-acting enhancers
- (2009) Axel Visel et al. NATURE
- Transcription factories: gene expression in unions?
- (2009) Heidi Sutherland et al. NATURE REVIEWS GENETICS
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