Identification and assessment of cardiolipin interactions with E. coli inner membrane proteins

Native-like membrane models of E. coli polar lipid extract shed light on the importance of lipid composition complexity

(2021) Kristyna Pluhackova et al.   BMC BIOLOGY

Martini 3: a general purpose force field for coarse-grained molecular dynamics

(2021) Paulo C. T. Souza et al.   NATURE METHODS

Defining how multiple lipid species interact with inward rectifier potassium (Kir2) channels

(2020) Anna L. Duncan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structures of cell wall arabinosyltransferases with the anti-tuberculosis drug ethambutol

(2020) Lu Zhang et al.   SCIENCE

An essential role for cardiolipin in the stability and function of the mitochondrial calcium uniporter

(2020) Sagnika Ghosh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phospholipid distribution in the cytoplasmic membrane of Gram-negative bacteria is highly asymmetric, dynamic, and cell shape-dependent

(2020) Mikhail Bogdanov et al.   Science Advances

Cryo-EM structure of trimeric Mycobacterium smegmatis succinate dehydrogenase with a membrane-anchor SdhF

(2020) Hongri Gong et al.   Nature Communications

How cardiolipin modulates the dynamics of respiratory complex I

(2019) Alexander Jussupow et al.   Science Advances

Emerging Diversity in Lipid–Protein Interactions

(2019) Valentina Corradi et al.   CHEMICAL REVIEWS

Cardiolipin-Dependent Properties of Model Mitochondrial Membranes from Molecular Simulations

(2019) Blake A. Wilson et al.   BIOPHYSICAL JOURNAL

Insights into Membrane Protein–Lipid Interactions from Free Energy Calculations

(2019) Robin A. Corey et al.   Journal of Chemical Theory and Computation

A Mass-Spectrometry-Based Approach to Distinguish Annular and Specific Lipid Binding to Membrane Proteins

(2019) Jani Reddy Bolla et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

The energetics of protein–lipid interactions as viewed by molecular simulations

(2019) Robin A. Corey et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Specific cardiolipin–SecY interactions are required for proton-motive force stimulation of protein secretion

(2018) Robin A. Corey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Allostery revealed within lipid binding events to membrane proteins

(2018) John W. Patrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lipid–Protein Interactions Are Unique Fingerprints for Membrane Proteins

(2018) Valentina Corradi et al.   ACS Central Science

Molecular Dynamics Simulations of Kir2.2 Interactions with an Ensemble of Cholesterol Molecules

(2018) Nicolas Barbera et al.   BIOPHYSICAL JOURNAL

Structure of photosynthetic LH1–RC supercomplex at 1.9 Å resolution

(2018) Long-Jiang Yu et al.   NATURE

Structure of a functional obligate complex III2IV2 respiratory supercomplex from Mycobacterium smegmatis

(2018) Benjamin Wiseman et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The MemProtMD database: a resource for membrane-embedded protein structures and their lipid interactions

(2018) Thomas D Newport et al.   NUCLEIC ACIDS RESEARCH

The role of interfacial lipids in stabilizing membrane protein oligomers

(2017) Kallol Gupta et al.   NATURE

Cardiolipin mediates membrane and channel interactions of the mitochondrial TIM23 protein import complex receptor Tim50

(2017) Ketan Malhotra et al.   Science Advances

Loss of protein association causes cardiolipin degradation in Barth syndrome

(2016) Yang Xu et al.   Nature Chemical Biology

Cardiolipin binds selectively but transiently to conserved lysine residues in the rotor of metazoan ATP synthases

(2016) Anna L. Duncan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cardiolipin Interactions with Proteins

(2015) Joan Planas-Iglesias et al.   BIOPHYSICAL JOURNAL

Guidelines for the analysis of free energy calculations

(2015) Pavel V. Klimovich et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes

(2015) Phillip J. Stansfeld et al.   STRUCTURE

Structural adaptations of proteins to different biological membranes

(2013) Irina D. Pogozheva et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

PLUMED 2: New feathers for an old bird

(2013) Gareth A. Tribello et al.   COMPUTER PHYSICS COMMUNICATIONS

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles

(2012) Robert B. Best et al.   Journal of Chemical Theory and Computation

OPM database and PPM web server: resources for positioning of proteins in membranes

(2011) Mikhail A. Lomize et al.   NUCLEIC ACIDS RESEARCH

PLUMED: A portable plugin for free-energy calculations with molecular dynamics

(2009) Massimiliano Bonomi et al.   COMPUTER PHYSICS COMMUNICATIONS

To flip or not to flip: lipid–protein charge interactions are a determinant of final membrane protein topology

(2008) Mikhail Bogdanov et al.   JOURNAL OF CELL BIOLOGY

Statistically optimal analysis of samples from multiple equilibrium states

(2008) Michael R. Shirts et al.   JOURNAL OF CHEMICAL PHYSICS

The MARTINI Coarse-Grained Force Field: Extension to Proteins

(2008) Luca Monticelli et al.   Journal of Chemical Theory and Computation