An ancient whole-genome duplication event and its contribution to flavor compounds in the tea plant (Camellia sinensis)

Molecular Evolutionary Genetics Analysis (MEGA) for macOS

(2020) Glen Stecher et al.   MOLECULAR BIOLOGY AND EVOLUTION

The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants

(2020) Takashi Akagi et al.   PLoS Genetics

Tea plant genomics: achievements, challenges and perspectives

(2020) En-Hua Xia et al.   Horticulture Research

Identification and distribution of a single nucleotide polymorphism responsible for the catechin content in tea plants

(2020) Chen-Kai Jiang et al.   Horticulture Research

The reference genome of tea plant and resequencing of 81 diverse accessions provide insights into genome evolution and adaptation of tea plants

(2020) Enhua Xia et al.   Molecular Plant

The Chromosome-Level Reference Genome of Tea Tree Unveils Recent Bursts of Non-autonomous LTR Retrotransposons in Driving Genome Size Evolution

(2020) Qun-Jie Zhang et al.   Molecular Plant

The chromosome-scale genome reveals the evolution and diversification after the recent tetraploidization event in tea plant

(2020) Jie-Dan Chen et al.   Horticulture Research

Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole genome duplications

(2020) Caifei Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties

(2020) Weiyi Zhang et al.   Nature Communications

Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics

(2020) Junyang Yue et al.   Horticulture Research

The ancient wave of polyploidization events in flowering plants and their facilitated adaptation to environmental stress

(2020) Liangsheng Zhang et al.   PLANT CELL AND ENVIRONMENT

Chromosome-level genome assembly of a parent species of widely cultivated azaleas

(2020) Fu-Sheng Yang et al.   Nature Communications

Population sequencing enhances understanding of tea plant evolution

(2020) Xinchao Wang et al.   Nature Communications

Tea Plant Information Archive ( TPIA ): A comprehensive genomics and bioinformatics platform for tea plant

(2019) En‐Hua Xia et al.   PLANT BIOTECHNOLOGY JOURNAL

Inference of Ancient Whole-Genome Duplications and the Evolution of Gene Duplication and Loss Rates

(2019) Arthur Zwaenepoel et al.   MOLECULAR BIOLOGY AND EVOLUTION

Enantiomeric Trimethylallantoin Monomers, Dimers, and Trimethyltriuret: Evidence for an Alternative Catabolic Pathway of Caffeine in Tea Plant

(2019) Wei Wang et al.   ORGANIC LETTERS

The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae)

(2019) Valerie L Soza et al.   Genome Biology and Evolution

Genome sequences of horticultural plants: past, present, and future

(2019) Fei Chen et al.   Horticulture Research

A high-quality Actinidia chinensis (kiwifruit) genome

(2019) Haolin Wu et al.   Horticulture Research

OUP accepted manuscript

(2018)   BIOINFORMATICS

Draft genome sequence ofCamellia sinensisvar.sinensisprovides insights into the evolution of the tea genome and tea quality

(2018) Chaoling Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequenced Angiosperm Genomes and Genome Databases

(2018) Fei Chen et al.   Frontiers in Plant Science

The opium poppy genome and morphinan production

(2018) Li Guo et al.   SCIENCE

The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis

(2017) En-Hua Xia et al.   Molecular Plant

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

The evolutionary significance of polyploidy

(2017) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data

(2016) George P. Tiley et al.   Genome Biology and Evolution

The coffee genome hub: a resource for coffee genomes

(2014) Alexis Dereeper et al.   NUCLEIC ACIDS RESEARCH

Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution

(2014) Kevin Vanneste et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Differential regulation of caffeine metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta)

(2014) Charlène Perrois et al.   PLANTA

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

A genome triplication associated with early diversification of the core eudicots

(2012) Yuannian Jiao et al.   GENOME BIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales

(2010) Tao Shi et al.   ANNALS OF BOTANY

The collapse of gene complement following whole genome duplication

(2010) David Sankoff et al.   BMC GENOMICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION