CASPredict: a web service for identifying Cas proteins

PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins

(2020) Jiawei Wang et al.   NUCLEIC ACIDS RESEARCH

CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

(2020) Victor A Padilha et al.   GigaScience

Origins and evolution of CRISPR-Cas systems

(2019) Eugene V. Koonin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

CRISPR-Cas bioinformatics

(2019) Omer S. Alkhnbashi et al.   METHODS

PhD7Faster 2.0: predicting clones propagating faster from the Ph.D.-7 phage display library by coupling PseAAC and tripeptide composition

(2019) Bifang He et al.   PeerJ

A step-by-step classification algorithm of protein secondary structures based on double-layer SVM model

(2019) Yongzhen Ge et al.   GENOMICS

Exploring the potential of 3D Zernike descriptors and SVM for protein–protein interface prediction

(2018) Sebastian Daberdaku et al.   BMC BIOINFORMATICS

The Biology of CRISPR-Cas: Backward and Forward

(2018) Frank Hille et al.   CELL

History of CRISPR-Cas from Encounter with a Mysterious Repeated Sequence to Genome Editing Technology

(2018) Yoshizumi Ishino et al.   JOURNAL OF BACTERIOLOGY

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

(2018) David Couvin et al.   NUCLEIC ACIDS RESEARCH

Bastion3: a two-layer ensemble predictor of type III secreted effectors

(2018) Jiawei Wang et al.   BIOINFORMATICS

HMMCAS: a web tool for the identification and domain annotations of Cas proteins

(2017) Guoshi Chai et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The Revolution Continues: Newly Discovered Systems Expand the CRISPR-Cas Toolkit

(2017) Karthik Murugan et al.   MOLECULAR CELL

Diversity and evolution of class 2 CRISPR–Cas systems

(2017) Sergey Shmakov et al.   NATURE REVIEWS MICROBIOLOGY

PSBinder: A Web Service for Predicting Polystyrene Surface-Binding Peptides

(2017) Ning Li et al.   Biomed Research International

CRISPRDetect: A flexible algorithm to define CRISPR arrays

(2016) Ambarish Biswas et al.   BMC GENOMICS

Identification of apolipoprotein using feature selection technique

(2016) Hua Tang et al.   Scientific Reports

SABinder: A Web Service for Predicting Streptavidin-Binding Peptides

(2016) Bifang He et al.   Biomed Research International

Identification of Secretory Proteins inMycobacterium tuberculosisUsing Pseudo Amino Acid Composition

(2016) Huan Yang et al.   Biomed Research International

PHYPred: a tool for identifying bacteriophage enzymes and hydrolases

(2016) Hui Ding et al.   VIROLOGICA SINICA

HMMER web server: 2015 update

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Predicting cancerlectins by the optimal g-gap dipeptides

(2015) Hao Lin et al.   Scientific Reports

Identifying Antioxidant Proteins by Using Optimal Dipeptide Compositions

(2015) Pengmian Feng et al.   Interdisciplinary Sciences-Computational Life Sciences

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems

(2014) Sophie S. Abby et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Prediction of protein-protein interactions between viruses and human by an SVM model

(2012) Guangyu Cui et al.   BMC BIOINFORMATICS

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH