Metagenomic strategies identify diverse integron‐integrase and antibiotic resistance genes in the Antarctic environment

Antibiotic resistance in bacterial isolates from freshwater samples in Fildes Peninsula, King George Island, Antarctica

(2020) Daniela Jara et al.   Scientific Reports

Structure-specific DNA recombination sites: Design, validation, and machine learning–based refinement

(2020) Aleksandra Nivina et al.   Science Advances

Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments

(2019) Antti Karkman et al.   Nature Communications

Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters

(2019) Pablo Fresia et al.   Microbiome

High diversity and rapid spatial turnover of integron gene cassettes in soil

(2019) Timothy M. Ghaly et al.   ENVIRONMENTAL MICROBIOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Metagenomic characterization of antibiotic resistance genes in Antarctic soils

(2019) Ke Yuan et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Detection of presumed genes encoding beta-lactamases by sequence based screening of metagenomes derived from Antarctic microbial mats

(2019) Gastón Azziz et al.   Frontiers of Environmental Science & Engineering

Clinical class 1 integron-integrase gene – A promising indicator to monitor the abundance and elimination of antibiotic resistance genes in an urban wastewater treatment plant

(2019) Wanlin Zheng et al.   ENVIRONMENT INTERNATIONAL

Prokaryotic diversity in four microbial mats on the Fildes Peninsula, King George Island, maritime Antarctica

(2018) Cecilia Callejas et al.   POLAR BIOLOGY

A reservoir of ‘historical’ antibiotic resistance genes in remote pristine Antarctic soils

(2018) Marc W. Van Goethem et al.   Microbiome

Occurrence of antibiotics and bacterial resistance in wastewater and sea water from the Antarctic

(2018) F. Hernández et al.   JOURNAL OF HAZARDOUS MATERIALS

Identification and analysis of integrons and cassette arrays in bacterial genomes

(2016) Jean Cury et al.   NUCLEIC ACIDS RESEARCH

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

Antibiotic resistance in Escherichia coli strains isolated from Antarctic bird feces, water from inside a wastewater treatment plant, and seawater samples collected in the Antarctic Treaty area

(2016) Virginia Rabbia et al.   Polar Science

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution

(2014) Michael R Gillings et al.   ISME Journal

Integrons: Past, Present, and Future

(2014) Michael R. Gillings   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Detection of florfenicol resistance genes in Riemerella anatipestifer isolated from ducks and geese

(2011) Yen-Ping Chen et al.   VETERINARY MICROBIOLOGY

Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons

(2011) Guillaume Cambray et al.   Mobile DNA

Integrons

(2010) Guillaume Cambray et al.   Annual Review of Genetics

Inverse Correlation between Promoter Strength and Excision Activity in Class 1 Integrons

(2010) Thomas Jové et al.   PLoS Genetics

Terrestrial biodiversity in Antarctica – Recent advances and future challenges

(2010) Peter Convey   Polar Science

Worldwide Prevalence of Class 2 Integrases outside the Clinical Setting Is Associated with Human Impact

(2009) C. M. Rodriguez-Minguela et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

INTEGRALL: a database and search engine for integrons, integrases and gene cassettes

(2009) A. Moura et al.   BIOINFORMATICS

The SOS Response Controls Integron Recombination

(2009) E. Guerin et al.   SCIENCE

Insights and inferences about integron evolution from genomic data

(2008) Diana R Nemergut et al.   BMC GENOMICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS