Optimized bacterial DNA isolation method for microbiome analysis of human tissues
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Optimized bacterial DNA isolation method for microbiome analysis of human tissues
Authors
Keywords
-
Journal
MicrobiologyOpen
Volume 10, Issue 3, Pages -
Publisher
Wiley
Online
2021-06-17
DOI
10.1002/mbo3.1191
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles
- (2019) Maria T. Nelson et al. Cell Reports
- Increases in Colonic Bacterial Diversity after ω-3 Fatty Acid Supplementation Predict Decreased Colonic Prostaglandin E2 Concentrations in Healthy Adults
- (2019) Zora Djuric et al. JOURNAL OF NUTRITION
- Crypt- and Mucosa-Associated Core Microbiotas in Humans and Their Alteration in Colon Cancer Patients
- (2019) Azadeh Saffarian et al. mBio
- Effects of sampling strategy and DNA extraction on human skin microbiome investigations
- (2019) Rie Dybboe Bjerre et al. Scientific Reports
- Comparison of DNA extraction methods for human gut microbial community profiling
- (2018) Mi Young Lim et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Improving saliva shotgun metagenomics by chemical host DNA depletion
- (2018) Clarisse A. Marotz et al. Microbiome
- Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem
- (2018) Stilianos Louca et al. Microbiome
- Gastric microbiota features associated with cancer risk factors and clinical outcomes: A pilot study in gastric cardia cancer patients from Shanxi, China
- (2017) Guoqin Yu et al. INTERNATIONAL JOURNAL OF CANCER
- Preservation of bacterial DNA in 10-year-old guaiac FOBT cards and FIT tubes
- (2017) Matheus Couto Furtado Albuquerque et al. JOURNAL OF CLINICAL PATHOLOGY
- Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing
- (2016) Ravi Ranjan et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Depletion of Human DNA in Spiked Clinical Specimens for Improvement of Sensitivity of Pathogen Detection by Next-Generation Sequencing
- (2016) Mohammad R. Hasan et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Comparison of microbial DNA enrichment tools for metagenomic whole genome sequencing
- (2016) Matthew Thoendel et al. JOURNAL OF MICROBIOLOGICAL METHODS
- The Human Intestinal Microbiome in Health and Disease
- (2016) Susan V. Lynch et al. NEW ENGLAND JOURNAL OF MEDICINE
- Extending colonic mucosal microbiome analysis—assessment of colonic lavage as a proxy for endoscopic colonic biopsies
- (2016) Euan Watt et al. Microbiome
- Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition
- (2016) Berith E. Knudsen et al. mSystems
- Use of 16S rRNA Gene-Targeted Group-Specific Primers for Real-Time PCR Analysis of Predominant Bacteria in Mouse Feces
- (2015) Yun-Wen Yang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differences
- (2015) Brett Wagner Mackenzie et al. Frontiers in Microbiology
- Potential of fecal microbiota for early-stage detection of colorectal cancer
- (2014) G. Zeller et al. Molecular Systems Biology
- Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis
- (2014) Agata Wesolowska-Andersen et al. Microbiome
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Comparison of Pathogen DNA Isolation Methods from Large Volumes of Whole Blood to Improve Molecular Diagnosis of Bloodstream Infections
- (2013) Anne J. M. Loonen et al. PLoS One
- Colonic mucosal microbiome differs from stool microbiome in cirrhosis and hepatic encephalopathy and is linked to cognition and inflammation
- (2012) Jasmohan S. Bajaj et al. AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
- (2012) Nicholas A Bokulich et al. NATURE METHODS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Deep Sequencing Analyses of Low Density Microbial Communities: Working at the Boundary of Accurate Microbiota Detection
- (2012) Giske Biesbroek et al. PLoS One
- Evaluation of Methods for the Extraction and Purification of DNA from the Human Microbiome
- (2012) Sanqing Yuan et al. PLoS One
- The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome
- (2012) Dirk Gevers et al. PLOS BIOLOGY
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- FLASH: fast length adjustment of short reads to improve genome assemblies
- (2011) T. Magoc et al. BIOINFORMATICS
- Microbial DNA extraction from intestinal biopsies is improved by avoiding mechanical cell disruption
- (2011) Franck Carbonero et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Improvement of phylum- and class-specific primers for real-time PCR quantification of bacterial taxa
- (2011) Tristano Bacchetti De Gregoris et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Characterization of Bacteria in Biopsies of Colon and Stools by High Throughput Sequencing of the V2 Region of Bacterial 16S rRNA Gene in Human
- (2011) Yukihide Momozawa et al. PLoS One
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- New methods for selective isolation of bacterial DNA from human clinical specimens
- (2009) Hans-Peter Horz et al. ANAEROBE
- Genome wide molecular analysis of minimally differentiated acute myeloid leukemia
- (2009) F. P.G. Silva et al. HAEMATOLOGICA
- Two divergent leptin paralogues in zebrafish (Danio rerio) that originate early in teleostean evolution
- (2009) Marnix Gorissen et al. JOURNAL OF ENDOCRINOLOGY
- Improved detection of microbial DNA after bead-beating before DNA isolation
- (2009) Richard de Boer et al. JOURNAL OF MICROBIOLOGICAL METHODS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started