Laccase Directed Lignification Is One of the Major Processes Associated With the Defense Response Against Pythium ultimum Infection in Apple Roots

A systematic analysis of apple root resistance traits to Pythium ultimum infection and the underpinned molecular regulations of defense activation

(2020) Yanmin Zhu et al.   Horticulture Research

Enhanced resistance to bacterial and oomycete pathogens by short tandem target mimic RNAs in tomato

(2019) Alex Canto-Pastor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour

(2019) Liyi Zhang et al.   Nature Communications

The Elaboration of miRNA Regulation and Gene Regulatory Networks in Plant–Microbe Interactions

(2019) de Vries et al.   Genes

Conserved Biochemical Defenses Underpin Host Responses to Oomycete Infection in an Early-Divergent Land Plant Lineage

(2019) Philip Carella et al.   CURRENT BIOLOGY

Overexpression of MiR482c in Tomato Induces Enhanced Susceptibility to Late Blight

(2019) Yu-Hui Hong et al.   Cells

Distinct patterns of natural selection determine sub-population structure in the fire blight pathogen, Erwinia amylovora

(2019) Jugpreet Singh et al.   Scientific Reports

Lignin metabolism involves Botrytis cinerea BcGs1- induced defense response in tomato

(2018) Chenyu Yang et al.   BMC PLANT BIOLOGY

Plant microRNAs: Front line players against invading pathogens

(2018) Waqar Islam et al.   MICROBIAL PATHOGENESIS

Functional characterization of an apple ( Malus x domestica ) LysM domain receptor encoding gene for its role in defense response

(2018) Zhe Zhou et al.   PLANT SCIENCE

Expression profiling across wild and cultivated tomatoes supports the relevance of early miR482/2118 suppression for Phytophthora resistance

(2018) Sophie de Vries et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Function identification of miR482b, a negative regulator during tomato resistance to Phytophthora infestans

(2018) Ning Jiang et al.   Horticulture Research

Small RNAs, emerging regulators critical for the development of horticultural traits

(2018) Chengjie Chen et al.   Horticulture Research

A Phytophthora Effector Suppresses Trans-Kingdom RNAi to Promote Disease Susceptibility

(2018) Yingnan Hou et al.   Cell Host & Microbe

Genotype-specific suppression of multiple defense pathways in apple root during infection by Pythium ultimum

(2018) Yanmin Zhu et al.   Horticulture Research

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

(2017) Nicolas Daccord et al.   NATURE GENETICS

MicroRNA-Mediated Gene Silencing in Plant Defense and Viral Counter-Defense

(2017) Sheng-Rui Liu et al.   Frontiers in Microbiology

Functional Roles of microRNAs in Agronomically Important Plants—Potential as Targets for Crop Improvement and Protection

(2017) Arnaud T. Djami-Tchatchou et al.   Frontiers in Plant Science

MicroRNA and Transcription Factor: Key Players in Plant Regulatory Network

(2017) Abdul F. A. Samad et al.   Frontiers in Plant Science

Interaction between the mossPhyscomitrella patensandPhytophthora: a novel pathosystem for live-cell imaging of subcellular defence

(2016) ELYSA J. R. OVERDIJK et al.   JOURNAL OF MICROSCOPY

Transcriptional Regulation of Auxin Metabolism and Ethylene Biosynthesis Activation During Apple (Malus × domestica) Fruit Maturation

(2016) Sungbong Shin et al.   JOURNAL OF PLANT GROWTH REGULATION

Signatures of selection and host-adapted gene expression of thePhytophthora infestansRNA silencing suppressor PSR2

(2016) Sophie de Vries et al.   MOLECULAR PLANT PATHOLOGY

Small RNAs Add Zing to the Zig-Zag-Zig Model of Plant Defenses

(2016) Qili Fei et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The copper microRNAs

(2016) Marinus Pilon   NEW PHYTOLOGIST

Transcriptome changes specifically associated with apple ( Malus domestica ) root defense response during Pythium ultimum infection

(2016) Sungbong Shin et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

RNA ‘Information Warfare’ in Pathogenic and Mutualistic Interactions

(2016) Thomas Chaloner et al.   TRENDS IN PLANT SCIENCE

Small RNAs — the secret agents in the plant–pathogen interactions

(2015) Arne Weiberg et al.   CURRENT OPINION IN PLANT BIOLOGY

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

Extensive Families of miRNAs andPHASLoci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants

(2015) Rui Xia et al.   MOLECULAR BIOLOGY AND EVOLUTION

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Transcriptional responses of Norway spruce (Picea abies) inner sapwood againstHeterobasidion parviporum

(2015) J. Oliva et al.   TREE PHYSIOLOGY

Small RNAs: A New Paradigm in Plant-Microbe Interactions

(2014) Arne Weiberg et al.   Annual Review of Phytopathology

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

Pentatricopeptide Repeat Proteins in Plants

(2014) Alice Barkan et al.   Annual Review of Plant Biology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

miRNAs in the crosstalk between phytohormone signalling pathways

(2014) J. Curaba et al.   JOURNAL OF EXPERIMENTAL BOTANY

Roles of small RNAs in plant disease resistance

(2014) Li Yang et al.   Journal of Integrative Plant Biology

MicroRNA400-Guided Cleavage of Pentatricopeptide Repeat Protein mRNAs Renders Arabidopsis thaliana More Susceptible to Pathogenic Bacteria and Fungi

(2014) Young Ju Park et al.   PLANT AND CELL PHYSIOLOGY

The functional scope of plant microRNA-mediated silencing

(2014) Junyan Li et al.   TRENDS IN PLANT SCIENCE

The role of the secondary cell wall in plant resistance to pathogens

(2014) Eva Miedes et al.   Frontiers in Plant Science

Elucidating the molecular responses of apple rootstock resistant to ARD pathogens: challenges and opportunities for development of genomics-assisted breeding tools

(2014) Yanmin Zhu et al.   Horticulture Research

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Oomycete pathogens encode RNA silencing suppressors

(2013) Yongli Qiao et al.   NATURE GENETICS

MicroRNA Superfamilies Descended from miR390 and Their Roles in Secondary Small Interfering RNA Biogenesis in Eudicots

(2013) Rui Xia et al.   PLANT CELL

Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks

(2013) Q. Fei et al.   PLANT CELL

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

(2013) S. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emerging role for RNA-based regulation in plant immunity

(2012) Dorothee Staiger et al.   NEW PHYTOLOGIST

A MicroRNA Cascade in Plant Defense

(2012) N. A. Eckardt   PLANT CELL

Apple miRNAs and tasiRNAs with novel regulatory networks

(2012) Rui Xia et al.   GENOME BIOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection

(2011) Marie Danielsson et al.   BMC PLANT BIOLOGY

Characterization of fungi (Fusarium and Rhizoctonia) and oomycetes (Phytophthora and Pythium) associated with apple orchards in South Africa

(2011) Yared Tesfai Tewoldemedhin et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Role of Small RNAs in Host-Microbe Interactions

(2010) Surekha Katiyar-Agarwal et al.   Annual Review of Phytopathology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Distinct extremely abundant siRNAs associated with cosuppression in petunia

(2009) E. De Paoli et al.   RNA

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

(2008) C SCHMITZLINNEWEBER et al.   TRENDS IN PLANT SCIENCE

Evolution of plant microRNAs and their targets

(2008) Michael J. Axtell et al.   TRENDS IN PLANT SCIENCE