A Global Analysis of Photoreceptor-Mediated Transcriptional Changes Reveals the Intricate Relationship Between Central Metabolism and DNA Repair in the Filamentous Fungus Trichoderma atroviride

Two white collar proteins protect fungal cells from solar UV damage by their interactions with two photolyases in Metarhizium robertsii

(2021) Han Peng et al.   ENVIRONMENTAL MICROBIOLOGY

Impact of the White Collar Photoreceptor WcoA on the Fusarium fujikuroi Transcriptome

(2021) Javier Pardo-Medina et al.   Frontiers in Microbiology

X-ray and UV Radiation Damage of dsDNA/Protein Complexes

(2021) Paweł Wityk et al.   MOLECULES

Photoprotective Role of Photolyase-Interacting RAD23 and Its Pleiotropic Effect on the Insect-Pathogenic Fungus Beauveria bassiana

(2020) Ding-Yi Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fluorescently-labelled CPD and 6-4PP photolyases: new tools for live-cell DNA damage quantification and laser-assisted repair

(2019) Barbara Steurer et al.   NUCLEIC ACIDS RESEARCH

Light in the Fungal World: From Photoreception to Gene Transcription and Beyond

(2019) Luis M. Corrochano   Annual Review of Genetics

Transcriptome Analysis of Cordyceps militaris Reveals Genes Associated With Carotenoid Synthesis and Identification of the Function of the Cmtns Gene

(2019) Hai-Wei Lou et al.   Frontiers in Microbiology

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional Characterization of the alb1 Orthologue Gene in the Ochratoxigenic Fungus Aspergillus carbonarius (AC49 strain)

(2018) Donato Gerin et al.   Toxins

Transcription Factor NsdD Regulates the Expression of Genes Involved in Plant Biomass-Degrading Enzymes, Conidiation, and Pigment Biosynthesis in Penicillium oxalicum

(2018) Qi-Peng He et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Two photolyases repair distinct DNA lesions and reactivate UVB-inactivated conidia of an insect mycopathogen under visible light

(2018) Ding-Yi Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Trichoderma atroviride cryptochrome/photolyase genes regulate the expression of blr1 -independent genes both in red and blue light

(2016) Mónica García-Esquivel et al.   Fungal Biology

ATrichoderma atroviridestress-activated MAPK pathway integrates stress and light signals

(2016) Edgardo Ulises Esquivel-Naranjo et al.   MOLECULAR MICROBIOLOGY

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Structural Biochemistry of a Fungal LOV Domain Photoreceptor Reveals an Evolutionarily Conserved Pathway Integrating Light and Oxidative Stress

(2015) Jameela Lokhandwala et al.   STRUCTURE

White collar 1-induced photolyase expression contributes to UV-tolerance ofUstilago maydis

(2015) Annika Brych et al.   MicrobiologyOpen

Mechanism of the Neurospora Circadian Clock, a FREQUENCY-centric View

(2014) Joonseok Cha et al.   BIOCHEMISTRY

Crossroads between light response and nutrient signalling: ENV1 and PhLP1 act as mutual regulatory pair in Trichoderma reesei

(2014) Doris Tisch et al.   BMC GENOMICS

Understanding nucleotide excision repair and its roles in cancer and ageing

(2014) Jurgen A. Marteijn et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Trichoderma reesei Cry1 Protein Is a Member of the Cryptochrome/Photolyase Family with 6–4 Photoproduct Repair Activity

(2014) Jesús Guzmán-Moreno et al.   PLoS One

Genome-Wide Characterization of Light-Regulated Genes in Neurospora crassa

(2014) C. Wu et al.   G3-Genes Genomes Genetics

Targets of light signalling in Trichoderma reesei

(2013) Doris Tisch et al.   BMC GENOMICS

DNA Repair Mechanisms and the Bypass of DNA Damage in Saccharomyces cerevisiae

(2013) S. Boiteux et al.   GENETICS

Unravelling the molecular basis for light modulated cellulase gene expression - the role of photoreceptors in Neurospora crassa

(2012) Monika Schmoll et al.   BMC GENOMICS

Camera: a competitive gene set test accounting for inter-gene correlation

(2012) Di Wu et al.   NUCLEIC ACIDS RESEARCH

The Cryptochromes: Blue Light Photoreceptors in Plants and Animals

(2011) Inês Chaves et al.   Annual Review of Plant Biology

Regulation of Conidiation by Light inAspergillus nidulans

(2011) Carmen Ruger-Herreros et al.   GENETICS

Fungi, Hidden in Soil or Up in the Air: Light Makes a Difference

(2010) Julio Rodriguez-Romero et al.   Annual Review of Microbiology

Photoadaptation in Neurospora by Competitive Interaction of Activating and Inhibitory LOV Domains

(2010) Erik Malzahn et al.   CELL

Trichoderma in the light of day – Physiology and development

(2010) Monika Schmoll et al.   FUNGAL GENETICS AND BIOLOGY

Crucial factors of the light perception machinery and their impact on growth and cellulase gene transcription in Trichoderma reesei

(2010) Francisco Castellanos et al.   FUNGAL GENETICS AND BIOLOGY

Physical interaction between VIVID and white collar complex regulates photoadaptation in Neurospora

(2010) C.-H. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

VIVID interacts with the WHITE COLLAR complex and FREQUENCY-interacting RNA helicase to alter light and clock responses in Neurospora

(2010) S. M. Hunt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora

(2009) Chen-Hui Chen et al.   EMBO JOURNAL

Application of a molecular biology concept for the detection of DNA damage and repair during UV disinfection

(2009) Jacqueline Süß et al.   WATER RESEARCH

Functional and Physical Interaction of Blue- and Red-Light Sensors in Aspergillus nidulans

(2008) Janina Purschwitz et al.   CURRENT BIOLOGY