Profiling CD8+ T cell epitopes of COVID-19 convalescents reveals reduced cellular immune responses to SARS-CoV-2 variants

Adaptive immunity to SARS-CoV-2 and COVID-19

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Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion

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Multiple SARS-CoV-2 variants escape neutralization by vaccine-induced humoral immunity

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SARS-CoV-2 variant B.1.1.7 is susceptible to neutralizing antibodies elicited by ancestral spike vaccines

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The Variant Gambit: COVID’s Next Move

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Comprehensive mapping of mutations in the SARS-CoV-2 receptor-binding domain that affect recognition by polyclonal human plasma antibodies

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SARS-CoV-2–specific CD8+ T cell responses in convalescent COVID-19 individuals

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Highly functional virus-specific cellular immune response in asymptomatic SARS-CoV-2 infection

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SARS-CoV-2 spike D614G change enhances replication and transmission

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Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

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SARS-CoV-2 D614G spike mutation increases entry efficiency with enhanced ACE2-binding affinity

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Risk of mortality in patients infected with SARS-CoV-2 variant of concern 202012/1: matched cohort study

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SARS-CoV-2 mutations in MHC-I-restricted epitopes evade CD8+ T cell responses

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Emerging SARS-CoV-2 Variants and Impact in Global Vaccination Programs against SARS-CoV-2/COVID-19

(2021) Carmen Elena Gómez et al.   Vaccines

SARS-CoV-2 variants B.1.351 and P.1 escape from neutralizing antibodies

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Escape of SARS-CoV-2 501Y.V2 from neutralization by convalescent plasma

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Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7

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LevioSAM: fast lift-over of variant-aware reference alignments

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SARS-CoV-2 spike L452R variant evades cellular immunity and increases infectivity

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Increased transmissibility and global spread of SARS-CoV-2 variants of concern as at June 2021

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Analysis of SARS-CoV-2 variant mutations reveals neutralization escape mechanisms and the ability to use ACE2 receptors from additional species

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Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals

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Transmission of SARS-CoV-2 in Domestic Cats

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SARS-CoV-2-reactive T cells in healthy donors and patients with COVID-19

(2020) Julian Braun et al.   NATURE

SARS-CoV-2-specific T cell immunity in cases of COVID-19 and SARS, and uninfected controls

(2020) Nina Le Bert et al.   NATURE

Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans

(2020) Jose Mateus et al.   SCIENCE

Phenotype and kinetics of SARS-CoV-2-specific T cells in COVID-19 patients with acute respiratory distress syndrome

(2020) Daniela Weiskopf et al.   Science Immunology

Robust T Cell Immunity in Convalescent Individuals with Asymptomatic or Mild COVID-19

(2020) Takuya Sekine et al.   CELL

Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant

(2020) Leonid Yurkovetskiy et al.   CELL

Unbiased screens show CD8+ T cells of COVID-19 patients recognize shared epitopes in SARS-CoV-2, most of which are not located in the Spike protein

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Broad and strong memory CD4+ and CD8+ T cells induced by SARS-CoV-2 in UK convalescent individuals following COVID-19

(2020) Yanchun Peng et al.   NATURE IMMUNOLOGY

SARS-CoV-2-derived peptides define heterologous and COVID-19-induced T cell recognition

(2020) Annika Nelde et al.   NATURE IMMUNOLOGY

Suboptimal SARS-CoV-2−specific CD8+ T cell response associated with the prominent HLA-A*02:01 phenotype

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Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

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SARS-CoV-2 Epitopes Are Recognized by a Public and Diverse Repertoire of Human T Cell Receptors

(2020) Alina S. Shomuradova et al.   IMMUNITY

PD-1-Expressing SARS-CoV-2-Specific CD8+ T Cells Are Not Exhausted, but Functional in Patients with COVID-19

(2020) Min-Seok Rha et al.   IMMUNITY

T-Scan: A Genome-wide Method for the Systematic Discovery of T Cell Epitopes

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Gapped sequence alignment using artificial neural networks: application to the MHC class I system

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GalaxyPepDock: a protein–peptide docking tool based on interaction similarity and energy optimization

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Crystal contacts as nature's docking solutions

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Adaptation of HIV-1 to human leukocyte antigen class I

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