An Integrative Toolbox for Synthetic Biology in Rhodococcus

A Set of Active Promoters with Different Activity Profiles for Superexpressing Rhodococcus Strain

(2021) Anna O. Shemyakina et al.   ACS Synthetic Biology

An Improved CRISPR Interference Tool to Engineer Rhodococcus opacus

(2021) Drew M. DeLorenzo et al.   ACS Synthetic Biology

Complementing Vanillin and Cellulose Production by Oxidation of Lignocellulose with Stirring Control

(2020) Yuting Zhu et al.   ACS Sustainable Chemistry & Engineering

Automated design of thousands of nonrepetitive parts for engineering stable genetic systems

(2020) Ayaan Hossain et al.   NATURE BIOTECHNOLOGY

Biotechnology of Rhodococcus for the production of valuable compounds

(2020) Martina Cappelletti et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of alkylguaiacol-degrading cytochromes P450 for the biocatalytic valorization of lignin

(2020) Morgan M. Fetherolf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Combinatorial metabolic pathway assembly approaches and toolkits for modular assembly

(2020) Rosanna Young et al.   METABOLIC ENGINEERING

Lessons from Two Design–Build–Test–Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning

(2019) Paul Opgenorth et al.   ACS Synthetic Biology

Engineering of an oleaginous bacterium for the production of fatty acids and fuels

(2019) Hye Mi Kim et al.   Nature Chemical Biology

Development of Rhodococcus opacus as a chassis for lignin valorization and bioproduction of high-value compounds

(2019) Winston E. Anthony et al.   Biotechnology for Biofuels

SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts

(2019) Esteban Martínez-García et al.   NUCLEIC ACIDS RESEARCH

A CRISPR/Cas9-based genome editing system for Rhodococcus ruber TH

(2019) Youxiang Liang et al.   METABOLIC ENGINEERING

Engineered promoters enable constant gene expression at any copy number in bacteria

(2018) Thomas H Segall-Shapiro et al.   NATURE BIOTECHNOLOGY

Core element characterization of Rhodococcus promoters and development of a promoter-RBS mini-pool with different activity levels for efficient gene expression

(2018) Song Jiao et al.   New Biotechnology

Molecular Toolkit for Gene Expression Control and Genome Modification in Rhodococcus opacus PD630

(2018) Drew M. DeLorenzo et al.   ACS Synthetic Biology

Loop assembly: a simple and open system for recursive fabrication of DNA circuits

(2018) Bernardo Pollak et al.   NEW PHYTOLOGIST

Characterization of a Minimal Type of Promoter Containing the −10 Element and a Guanine at the −14 or −13 Position in Mycobacteria

(2017) Yan Zhu et al.   JOURNAL OF BACTERIOLOGY

iML1515, a knowledgebase that computes Escherichia coli traits

(2017) Jonathan M Monk et al.   NATURE BIOTECHNOLOGY

Insulated transcriptional elements enable precise design of genetic circuits

(2017) Yeqing Zong et al.   Nature Communications

Development of Chemical and Metabolite Sensors for Rhodococcus opacus PD630

(2017) Drew M. DeLorenzo et al.   ACS Synthetic Biology

Programmable transcriptional repression in mycobacteria using an orthogonal CRISPR interference platform

(2017) Jeremy M. Rock et al.   Nature Microbiology

Synthetic promoter design for new microbial chassis

(2016) J. Gilman et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Engineering Cellular Metabolism

(2016) Jens Nielsen et al.   CELL

Addressing biological uncertainties in engineering gene circuits

(2016) Carolyn Zhang et al.   Integrative Biology

Synthetic biology to access and expand nature's chemical diversity

(2016) Michael J. Smanski et al.   NATURE REVIEWS MICROBIOLOGY

Characterization of key triacylglycerol biosynthesis processes in rhodococci

(2016) Sawsan Amara et al.   Scientific Reports

The Next Generation of Synthetic Biology Chassis: Moving Synthetic Biology from the Laboratory to the Field

(2016) Bryn L. Adams   ACS Synthetic Biology

Prospects of microbial cell factories developed through systems metabolic engineering

(2016) Martin Gustavsson et al.   Microbial Biotechnology

Towards lignin consolidated bioprocessing: simultaneous lignin depolymerization and product generation by bacteria

(2015) Davinia Salvachúa et al.   GREEN CHEMISTRY

Label-free and redox proteomic analyses of the triacylglycerol-accumulating Rhodococcus jostii RHA1

(2015) José Sebastián Dávila Costa et al.   MICROBIOLOGY-SGM

CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology

(2015) Sonya V. Iverson et al.   ACS Synthetic Biology

Codon Optimization OnLine (COOL): a web-based multi-objective optimization platform for synthetic gene design

(2014) Ju Xin Chin et al.   BIOINFORMATICS

A Synthetic Anhydrotetracycline-Controllable Gene Expression System in Ralstonia eutropha H16

(2014) Han Li et al.   ACS Synthetic Biology

Synthetic Promoters Functional in Francisella novicida and Escherichia coli

(2013) Ralph L. McWhinnie et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Design, construction and characterisation of a synthetic promoter library for fine-tuned gene expression in actinomycetes

(2013) Theresa Siegl et al.   METABOLIC ENGINEERING

High-level semi-synthetic production of the potent antimalarial artemisinin

(2013) C. J. Paddon et al.   NATURE

RNA-guided editing of bacterial genomes using CRISPR-Cas systems

(2013) Wenyan Jiang et al.   NATURE BIOTECHNOLOGY

Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system

(2013) David Bikard et al.   NUCLEIC ACIDS RESEARCH

Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems

(2013) James E. DiCarlo et al.   NUCLEIC ACIDS RESEARCH

Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids

(2012) Fuzhong Zhang et al.   NATURE BIOTECHNOLOGY

Gated rotation mechanism of site-specific recombination by  C31 integrase

(2012) F. J. Olorunniji et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The complex architecture of mycobacterial promoters

(2012) Mae Newton-Foot et al.   TUBERCULOSIS

Vanillin Catabolism in Rhodococcus jostii RHA1

(2011) Hao-Ping Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters

(2011) Nicolas Seghezzi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol

(2011) Harry Yim et al.   Nature Chemical Biology

A Modular Cloning System for Standardized Assembly of Multigene Constructs

(2011) Ernst Weber et al.   PLoS One

Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development

(2011) Jason W. Holder et al.   PLoS Genetics

Plasmid copy number noise in monoclonal populations of bacteria

(2010) Jérôme Wong Ng et al.   PHYSICAL REVIEW E

Programming cells by multiplex genome engineering and accelerated evolution

(2009) Harris H. Wang et al.   NATURE

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

The induction of folding cooperativity by ligand binding drives the allosteric response of tetracycline repressor

(2009) Sean E. Reichheld et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biosynthesis of storage compounds by Rhodococcus jostii RHA1 and global identification of genes involved in their metabolism

(2008) Martín A Hernández et al.   BMC GENOMICS

Site-specific integration ofStreptomycesΦC31 integrase-based vectors in the chromosome ofRhodococcus equi

(2008) Yang Hong et al.   FEMS MICROBIOLOGY LETTERS