MiSebastes: An eDNA metabarcoding primer set for rockfishes (genus Sebastes)

A rapid eDNA method for detecting white sharks in the open ocean

(2019) Nathan K. Truelove et al.   Methods in Ecology and Evolution

Anacapa Toolkit : an environmental DNA toolkit for processing multilocus metabarcode datasets

(2019) Emily E. Curd et al.   Methods in Ecology and Evolution

How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis

(2018) Vanessa A. Mata et al.   MOLECULAR ECOLOGY

Demonstration of the potential of environmental DNA as a tool for the detection of avian species

(2018) Masayuki Ushio et al.   Scientific Reports

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

Rapid degradation of longer DNA fragments enables the improved estimation of distribution and biomass using environmental DNA

(2017) Toshiaki Jo et al.   Molecular Ecology Resources

Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment

(2017) Michael Stat et al.   Scientific Reports

Spatial distribution of environmental DNA in a nearshore marine habitat

(2017) James L. O’Donnell et al.   PeerJ

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea

(2017) Satoshi Yamamoto et al.   Scientific Reports

Metabarcoding of marine zooplankton: prospects, progress and pitfalls

(2016) Ann Bucklin et al.   JOURNAL OF PLANKTON RESEARCH

Rockfish assemblage structure and spawning locations in southern California identified through larval sampling

(2016) AR Thompson et al.   MARINE ECOLOGY PROGRESS SERIES

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Comparison of capture and storage methods for aqueous macrobial eDNA using an optimized extraction protocol: advantage of enclosed filter

(2016) Johan Spens et al.   Methods in Ecology and Evolution

Rockfish assemblage structure and spawning locations in southern California identified through larval sampling

(2016) AR Thompson et al.   MARINE ECOLOGY PROGRESS SERIES

Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA

(2016) Masaki Miya et al.   Jove-Journal of Visualized Experiments

Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes

(2016) Philip Francis Thomsen et al.   PLoS One

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities?

(2015) Emily A. Brown et al.   Ecology and Evolution

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

The Geography of Morphological Convergence in the Radiations of Pacific Sebastes Rockfishes

(2014) Travis Ingram et al.   AMERICAN NATURALIST

Using Environmental DNA to Census Marine Fishes in a Large Mesocosm

(2014) Ryan P. Kelly et al.   PLoS One

Harnessing DNA to improve environmental management

(2014) R. P. Kelly et al.   SCIENCE

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Climate Change Impacts on Marine Ecosystems

(2011) Scott C. Doney et al.   Annual Review of Marine Science

Comparing volunteer and professionally collected monitoring data from the rocky subtidal reefs of Southern California, USA

(2011) David J. Gillett et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

(2011) Tiayyba Riaz et al.   NUCLEIC ACIDS RESEARCH

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

An In silico approach for the evaluation of DNA barcodes

(2010) Gentile Ficetola et al.   BMC GENOMICS

Observational methods used in marine spatial monitoring of fishes and associated habitats: a review

(2010) Hannah M. Murphy et al.   MARINE AND FRESHWATER RESEARCH

Quantification of the Detrimental Effect of a Single Primer-Template Mismatch by Real-Time PCR Using the 16S rRNA Gene as an Example

(2008) D. Bru et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters