Gut microbiota responses to dietary fibre sources in rats fed starch-based or quasi-human background diets

Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling

(2020) Ching Jian et al.   PLoS One

Kiwifruit drives human microbiota-derived DNA to stimulate IL-7 secretion in intestinal epithelial cells

(2020) Gunaranjan Paturi et al.   Journal of Functional Foods

Kiwifruit Skin and Flesh Contributions to Fecal Bulking and Bacterial Abundance in Rats

(2020) John A. Monro et al.   PLANT FOODS FOR HUMAN NUTRITION

Nutritional profile of rodent diets impacts experimental reproducibility in microbiome preclinical research

(2020) C. J. Tuck et al.   Scientific Reports

Understanding Competition and Cooperation within the Mammalian Gut Microbiome

(2019) Katharine Z. Coyte et al.   CURRENT BIOLOGY

Effect of Diet on the Gut Microbiota: Rethinking Intervention Duration

(2019) Emily R Leeming et al.   Nutrients

Habitual dietary fibre intake influences gut microbiota response to an inulin-type fructan prebiotic: a randomised, double-blind, placebo-controlled, cross-over, human intervention study

(2018) Genelle Healey et al.   BRITISH JOURNAL OF NUTRITION

Human digestion - a processing perspective

(2016) Mike Boland   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates

(2015) Doris Vandeputte et al.   GUT

The Impact of Diet and Lifestyle on Gut Microbiota and Human Health

(2014) Michael Conlon et al.   Nutrients

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prebiotic effects of fermentable carbohydrate polymers may be modulated by faecal bulking of non-fermentable polysaccharides in the large bowel of rats

(2012) John A. Monro et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS