Investigation of Salmonella Phage–Bacteria Infection Profiles: Network Structure Reveals a Gradient of Target-Range from Generalist to Specialist Phage Clones in Nested Subsets

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

(2021) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Characterization of Salmonella Isolates from Various Geographical Regions of the Caucasus and Their Susceptibility to Bacteriophages

(2020) Khatuna Makalatia et al.   Viruses-Basel

Extended-Spectrum β-Lactamases in Human Isolates of Multidrug-Resistant Non-typhoidal Salmonella enterica

(2020) Anahit M. Sedrakyan et al.   Frontiers in Microbiology

The genera of bacteriophages and their receptors are the major determinants of host range

(2019) Yilmaz Emre Gencay et al.   ENVIRONMENTAL MICROBIOLOGY

Coevolutionary dynamics shape the structure of bacteria‐phage infection networks

(2019) Miguel A. Fortuna et al.   EVOLUTION

Antibiotic Resistance in Salmonella Typhimurium Isolates Recovered From the Food Chain Through National Antimicrobial Resistance Monitoring System Between 1996 and 2016

(2019) Xuchu Wang et al.   Frontiers in Microbiology

Understanding and Exploiting Phage–Host Interactions

(2019) Edel Stone et al.   Viruses-Basel

Two Phages of the Genera Felixounavirus Subjected to 12 Hour Challenge on Salmonella Infantis Showed Distinct Genotypic and Phenotypic Changes

(2019) Rivera et al.   Viruses-Basel

Telling ecological networks apart by their structure: A computational challenge

(2019) Matthew J. Michalska-Smith et al.   PLoS Computational Biology

Diversity and Host Specificity Revealed by Biological Characterization and Whole Genome Sequencing of Bacteriophages Infecting Salmonella enterica

(2019) Fong et al.   Viruses-Basel

Selection of Potential Therapeutic Bacteriophages that Lyse a CTX-M-15 Extended Spectrum β-Lactamase Producing Salmonella enterica Serovar Typhi Strain from the Democratic Republic of the Congo

(2018) Elene Kakabadze et al.   Viruses-Basel

Phage typing, antibiotic resistance and genomic rep-PCR fingerprinting of clinical Salmonella isolates from the Caucasus region

(2018) E. Kakabadze et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

The structure of temperate phage–bacteria infection networks changes with the phylogenetic distance of the host bacteria

(2018) Carolin C. Wendling et al.   Biology Letters

Cross-resistance is modular in bacteria–phage interactions

(2018) Rosanna C. T. Wright et al.   PLOS BIOLOGY

Network structure and local adaptation in co-evolving bacteria-phage interactions

(2017) James Gurney et al.   MOLECULAR ECOLOGY

Bacteriophages as Therapeutic and Prophylactic Means: Summary of the Soviet and Post Soviet Experiences

(2016) Nina Chanishvili   Current Drug Delivery

Improved community detection in weighted bipartite networks

(2016) Stephen J. Beckett   Royal Society Open Science

A fast and unbiased procedure to randomize ecological binary matrices with fixed row and column totals

(2014) Giovanni Strona et al.   Nature Communications

Coevolutionary diversification creates nested-modular structure in phage-bacteria interaction networks

(2013) S. J. Beckett et al.   Interface Focus

Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

(2012) Cesar O Flores et al.   ISME Journal

Phage–bacteria infection networks

(2012) Joshua S. Weitz et al.   TRENDS IN MICROBIOLOGY

Characterization of a T5-Like Coliphage, SPC35, and Differential Development of Resistance to SPC35 inSalmonella entericaSerovar Typhimurium andEscherichia coli

(2011) Minsik Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Statistical structure of host-phage interactions

(2011) C. O. Flores et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteria-Phage Antagonistic Coevolution in Soil

(2011) P. Gomez et al.   SCIENCE

NAViGaTOR: Network Analysis, Visualization and Graphing Toronto

(2009) Kevin R. Brown et al.   BIOINFORMATICS

Identification of host receptor and receptor-binding module of a newly sequenced T5-like phage EPS7

(2008) Junwoo Hong et al.   FEMS MICROBIOLOGY LETTERS

Data completeness—the Achilles heel of drug-target networks

(2008) Jordi Mestres et al.   NATURE BIOTECHNOLOGY

A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement

(2008) Mário Almeida-Neto et al.   OIKOS

A consumer's guide to nestedness analysis

(2008) Werner Ulrich et al.   OIKOS