Desulfovibrio feeding Methanobacterium with electrons in conductive methanogenic aggregates from coastal zones

Methanobacterium Capable of Direct Interspecies Electron Transfer

(2020) Shiling Zheng et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Electroactive microorganisms in bioelectrochemical systems

(2019) Bruce E. Logan et al.   NATURE REVIEWS MICROBIOLOGY

Bacteria and archaea on Earth and their abundance in biofilms

(2019) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Improving anaerobic digestion via direct interspecies electron transfer requires development of suitable characterization methods

(2019) Caroline Van Steendam et al.   CURRENT OPINION IN BIOTECHNOLOGY

Multi-walled carbon nanotubes accelerate interspecies electron transfer between Geobacter cocultures

(2019) Shiling Zheng et al.   BIOELECTROCHEMISTRY

Evidence for the coexistence of direct and riboflavin‐mediated interspecies electron transfer in Geobacter co‐culture

(2019) Lingyan Huang et al.   ENVIRONMENTAL MICROBIOLOGY

Flagella act as Geobacter biofilm scaffolds to stabilize biofilm and facilitate extracellular electron transfer

(2019) Xing Liu et al.   BIOSENSORS & BIOELECTRONICS

Nano-Fe3O4 particles accelerating electromethanogenesis on an hour-long timescale in wetland soil

(2018) Leilei Xiao et al.   Environmental Science-Nano

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

Spatial variation in bacterial community in natural wetland-river-sea ecosystems

(2017) Hongxia Zhang et al.   JOURNAL OF BASIC MICROBIOLOGY

Electrochemically active iron (III)-reducing bacteria in coastal riverine sediments

(2017) Shiling Zheng et al.   JOURNAL OF BASIC MICROBIOLOGY

Comparative transcriptomic insights into the mechanisms of electron transfer in Geobacter co-cultures with activated carbon and magnetite

(2017) Shiling Zheng et al.   Science China-Life Sciences

Expressing the Geobacter metallireducens PilA in Geobacter sulfurreducens Yields Pili with Exceptional Conductivity

(2017) Yang Tan et al.   mBio

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

OrthoANI: An improved algorithm and software for calculating average nucleotide identity

(2016) Imchang Lee et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Happy together: microbial communities that hook up to swap electrons

(2016) Derek R Lovley   ISME Journal

Microbial nanowires: an electrifying tale

(2016) Sandeep Sure et al.   MICROBIOLOGY-SGM

Protist-Bacteria Associations: Gammaproteobacteria and Alphaproteobacteria Are Prevalent as Digestion-Resistant Bacteria in Ciliated Protozoa

(2016) Jun Gong et al.   Frontiers in Microbiology

Light-Induced Extracellular Electron Transport by the Marine Raphidophyte Chattonella marina

(2015) Xiaomin Li et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Co-occurrence of Methanosarcina mazei and Geobacteraceae in an iron (III)-reducing enrichment culture

(2015) Shiling Zheng et al.   Frontiers in Microbiology

Direct Interspecies Electron Transfer between Geobacter metallireducens and Methanosarcina barkeri

(2014) Amelia-Elena Rotaru et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures

(2014) Shanshan Chen et al.   BIORESOURCE TECHNOLOGY

Magnetite compensates for the lack of a pilin-associatedc-type cytochrome in extracellular electron exchange

(2014) Fanghua Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial solutions to multicellularity: a tale of biofilms, filaments and fruiting bodies

(2014) Dennis Claessen et al.   NATURE REVIEWS MICROBIOLOGY

Promoting Interspecies Electron Transfer with Biochar

(2014) Shanshan Chen et al.   Scientific Reports

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

(2014) Yu-Wei Wu et al.   Microbiome

Transcriptomic and Genetic Analysis of Direct Interspecies Electron Transfer

(2013) Pravin Malla Shrestha et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A new model for electron flow during anaerobic digestion: direct interspecies electron transfer to Methanosaeta for the reduction of carbon dioxide to methane

(2013) Amelia-Elena Rotaru et al.   Energy & Environmental Science

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Generation of High Current Densities by Pure Cultures of Anode-Respiring Geoalkalibacter spp. under Alkaline and Saline Conditions in Microbial Electrochemical Cells

(2013) J. P. Badalamenti et al.   mBio

Electrochemically active biofilms: facts and fiction. A review

(2012) Jerome Babauta et al.   BIOFOULING

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Promoting direct interspecies electron transfer with activated carbon

(2012) Fanghua Liu et al.   Energy & Environmental Science

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Terminology for biorelated polymers and applications (IUPAC Recommendations 2012)

(2012) Michel Vert et al.   PURE AND APPLIED CHEMISTRY

Electroactive biofilms: Current status and future research needs

(2011) Abhijeet P. Borole et al.   Energy & Environmental Science

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea

(2011) A.-K. Kaster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A genetic system for Geobacter metallireducens: role of the flagellin and pilin in the reduction of Fe(III) oxide

(2011) Pier-Luc Tremblay et al.   Environmental Microbiology Reports

Potential for Direct Interspecies Electron Transfer in Methanogenic Wastewater Digester Aggregates

(2011) M. Morita et al.   mBio

Application of cyclic voltammetry to investigate enhanced catalytic current generation by biofilm-modified anodes of Geobacter sulfurreducens strain DL1vs. variant strain KN400

(2010) Sarah M. Strycharz et al.   Energy & Environmental Science

The biofilm matrix

(2010) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Direct Exchange of Electrons Within Aggregates of an Evolved Syntrophic Coculture of Anaerobic Bacteria

(2010) Z. M. Summers et al.   SCIENCE

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Identification of iron-reducing microorganisms in anoxic rice paddy soil by 13C-acetate probing

(2009) Tomoyuki Hori et al.   ISME Journal

Electron transfer in syntrophic communities of anaerobic bacteria and archaea

(2009) Alfons J. M. Stams et al.   NATURE REVIEWS MICROBIOLOGY

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY