Article
Agronomy
Hana Stiborova, Martina Kracmarova, Tereza Vesela, Marta Biesiekierska, Jindrich Cerny, Jiri Balik, Katerina Demnerova
Summary: The study evaluated the risks associated with the repeated application of stabilized sewage sludge and manure on agricultural soils. The results showed a significant increase in the relative abundance of antibiotic resistance genes (ARGs) sul1 and tetW, with sul1 increasing in all treatments regardless of the time. It is recommended to monitor sul1 in organically fertilized soils to prevent its spread and potential accumulation in crops.
Article
Engineering, Environmental
Qiqi Fu, Zhiqiang Chen, Zhigang Yu, Yiqi Wu, Huanyu Bao, Jianhua Guo, Qinxue Wen
Summary: This study analyzed the variations of intracellular antibiotic resistance genes (iARGs) and extracellular antibiotic resistance genes (eARGs) in swine manure composting. The abundance of ARGs rebounded from the thermophilic phase to the mature phase due to the release of persistent eARGs and the increase of certain iARGs during cell proliferation. The conjugative transfer frequencies of ARGs in composting communities were comparable to pre-composting frequency, and ozone treatment was optimized to suppress the rebound and spread of ARGs, resulting in significant reduction of iARGs and decreased possibilities of conjugation and transformation among the composting products.
CHEMICAL ENGINEERING JOURNAL
(2023)
Article
Green & Sustainable Science & Technology
Yi-Long Hao, Gang Li, Zu-Fei Xiao, Ning Liu, Muhammad Azeem, Yi Zhao, Yao-Yang Xu, Xin-Wei Yu
Summary: The study found that ARGs were widespread in soils along the Taipu River, with varying profiles based on land use types but showing regional similarities. These characteristics were primarily determined by antibiotic input and ARG transmission mediated by MGEs, with toxic metals, PAHs, and soil properties contributing to ARG distribution in that order. The relationship between microbial ecology changed significantly with the enrichment of ARGs, impacting the watershed scale, where Transposon IS1247 was identified as an indicator of ARGs' impact on microbial ecology in the Taipu River Basin soils.
Article
Engineering, Environmental
Longshui Xu, Weizhong Wang, Weihong Xu
Summary: China is the world's largest livestock and poultry breeding country, as well as the largest user of veterinary antibiotics. Applying chicken manure to soil increases antibiotic residues and resistant bacteria, leading to the pollution of antibiotic resistance genes (ARGs) and posing risks to environmental pollution and human health.
ENVIRONMENTAL GEOCHEMISTRY AND HEALTH
(2022)
Article
Soil Science
Saranya Kuppusamy, Kadiyala Venkateswarlu, Mallavarapu Megharaj, Kanmani Sellappa, Yong Bok Lee
Summary: In this study, we investigated the presence of veterinary antibiotic residues, soil microorganisms, and antibiotic resistance genes (ARGs) in Indian rice paddies fertilized with animal manures. The most frequently detected antibiotics were tetracyclines and sulfonamides. Soils fertilized with poultry manure and cow manure contained significant amounts of veterinary antibiotics. Actinobacteria, Streptomyces, Rubrobacter, Pseudonocardia, Pseudomonas, and Rhizobium were the dominant soil microorganisms in these fertilized soils. ARGs conferring resistance to macrolides, aminocoumarins, multi-drugs, and sulfonamides were found in abundance, with Actinobacteria and Proteobacteria being the main phyla contributing to ARGs. Antibiotic modification/degradation was the major antibiotic resistance mechanism in bacteria enriched in long-term fertilized soils. Residues of tetracyclines, quinolones, sulfonamides, copper, and cadmium in soils were positively correlated with ARGs. This study provides the first evidence of the prevalence of veterinary antibiotics, antibiotic-resistant microbes, and ARGs in Indian rice paddies fertilized with animal manures and sheds light on the interactions between antibiotics, heavy metals, and ARGs.
APPLIED SOIL ECOLOGY
(2023)
Article
Environmental Sciences
Shuai Zhao, Yang Chang, Jia Liu, Thangavel Sangeetha, Yanzhong Feng, Di Liu, Chunzhu Xu
Summary: This study investigated the removal of antibiotic resistance genes (ARGs) in an industrial-scale pig manure management system and discussed the implications of mobile genetic elements (MGEs) and microbial community structure. The results showed that composting partially removed certain ARGs and MGEs, indicating that complete removal of ARGs/MGEs by composting was not achieved. Analysis of microbial communities revealed that changes in bacterial and fungal communities played a crucial role in the removal of ARGs/MGEs. The use of a compound microbial agent promoted composting temperature rise, which altered the microbial community structure and resulted in the removal of ARGs/MGEs.
JOURNAL OF ENVIRONMENTAL MANAGEMENT
(2022)
Article
Environmental Sciences
Jian-Hua Cheng, Xiang-Yu Tang, Jun-Fang Cui
Summary: Agricultural soils play a significant role in the reservoir of antibiotic resistance genes (ARGs) that are closely related to human health through the food supply. This study investigated the impact of soil aggregates on the distribution of ARGs. The results showed that manure application and aggregate size individually influenced the distribution of soil ARGs, with manured soils having more diverse and abundant ARGs. The <53 μm aggregate size fraction exhibited the highest diversity and abundance of ARGs. Soil traits, mobile genetic elements, and bacterial community collectively contributed to the variation of soil antibiotic resistance.
SCIENCE OF THE TOTAL ENVIRONMENT
(2022)
Article
Environmental Sciences
Feng Wang, Le Zhang, Yuting Luo, Yi Li, Xiaoshi Cheng, Jiashun Cao, Junfeng Wu, Haining Huang, Jingyang Luo, Yinglong Su
Summary: This study revealed the impacts of sodium dodecyl benzene sulfonate (SDBS) on the distribution of sulfadiazine (SDZ) induced antibiotic resistant genes (ARGs) during waste activated sludge (WAS) anaerobic fermentation. The results showed that SDBS exacerbated the selective pressure of SDZ, leading to the proliferation of ARGs and altered microbial community structure. This work provides insights into the ecological risks of different exogenous pollutants.
SCIENCE OF THE TOTAL ENVIRONMENT
(2023)
Article
Environmental Sciences
Zhen Bi, Ge Song, Xiaoming Sun
Summary: The responses of anammox consortia to antibiotics SDZ and CTC were evaluated in terms of general performance, microbial activity, diversity and abundance of antibiotic resistance genes (ARGs). The results showed that the consortia had great resistance to SDZ but were heavily affected by CTC. The presence of ARGs, particularly in Ca. Brocadia bacteria, played a significant role in the resistance mechanism.
ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
(2022)
Article
Agricultural Engineering
Zhiqiang Chen, Huanyu Bao, Qinxue Wen, Yiqi Wu, Qiqi Fu
Summary: This study found that adding biochar and H3PO4 modified biochar during swine manure composting can effectively reduce the soluble concentration of heavy metals, decrease the total abundance of antibiotic resistance genes and heavy metals resistance genes, and this reduction is related to changes in the bacterial community.
BIORESOURCE TECHNOLOGY
(2022)
Article
Biodiversity Conservation
Zhiming Zhang, Jun Yan, Xiaozeng Han, Wenxiu Zou, Xu Chen, Xinchun Lu, Yutian Feng
Summary: The highest contents of active SOC fractions were found in the organic manure (OM) treatment, while the highest maize yield was obtained in the chemical fertilizer with straw (CFS) treatment. Proteobacteria were widely distributed in all the fertilization treatments, and the dominant fungal phyla were Ascomycota in CK, CF and OM, and Basidiomycota in CFS treatment.
Soil bacterial/fungal communities and the active SOC fractions evidenced that fertilization, especially organic manure application, stimulated soil bacteria and fungi to participate in SOC turnover, contributing to improving the productivity and quality of black soil under sustainable management.
GLOBAL ECOLOGY AND CONSERVATION
(2021)
Article
Microbiology
Danyan Qiu, Nuohan Xu, Qi Zhang, Wenya Zhou, Yan Wang, Zhenyan Zhang, Yitian Yu, Tao Lu, Liwei Sun, Ning-Yi Zhou, W. J. G. M. Peijnenburg, Haifeng Qian
Summary: This study assessed the effects of abamectin on soil microorganisms by treating plant-soil microcosms with abamectin at concentrations of 0.1 and 1.0 mg/kg. The results showed that although abamectin was degradable, it altered soil microbial communities, disrupted microbial interactions, and decreased community complexity and stability. At the higher concentration, opportunistic human diseases and soil-borne pathogens were enriched in the soil. However, most ecological functions in the soil recovered within 21 days after abamectin treatment.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Environmental Sciences
Lijuan Feng, Changyan Xiao, Yuqin Luo, Yan Qiao, Dongzhi Chen
Summary: The presence of seaweeds improved the removal rates of nitrogen and phosphorus in maricultural wastewater, while the coexistence of seaweeds and OTC had varying impacts on the distribution of diverse antibiotic resistance genes in sediment.
JOURNAL OF ENVIRONMENTAL MANAGEMENT
(2022)
Article
Engineering, Environmental
Fei Zheng, Qing-Fang Bi, Madeline Giles, Roy Neilson, Qing-Lin Chen, Xian-Yong Lin, Yong-Guan Zhu, Xiao-Ru Yang
Summary: The application of organic fertilizers influences the abundance of ARGs in soil and the transfer of ARGs within the soil-nematode-earthworm food chain. The study highlights the potential mechanism for a wider dissemination of ARGs in the soil ecosystem.
ENVIRONMENTAL SCIENCE & TECHNOLOGY
(2021)
Review
Environmental Sciences
Rui Zhang, Shu Yang, Yuwei An, Yangqing Wang, Yu Lei, Liyan Song
Summary: Landfill serves as important reservoirs for antibiotics and antibiotic resistance genes, with risks of transferring to the local environment. Studies have shown complex linkages among antibiotics, ARGs, and bacterial communities, highlighting the need for further research.
SCIENCE OF THE TOTAL ENVIRONMENT
(2022)
Article
Ecology
Jane M. Lucas, Jayne Jonas, Angela N. Laws, David H. Branson, Steven C. Pennings, Chelse M. Prather, Michael S. Strickland
Summary: This study examined the interactions between herbivore species and functional diversity with nutrient availability in shaping above- and below-ground ecosystems. Results showed that herbivores affected plant biomass, richness, and soil microbial communities, and interactions with fertilizer influenced below-ground carbon availability and microbial biomass. The effects of herbivore diet and taxonomic composition on ecosystems highlight the importance of considering multiple diversity metrics in studies of herbivore-mediated effects.
FUNCTIONAL ECOLOGY
(2021)
Article
Biotechnology & Applied Microbiology
N. Aldossari, S. Ishii
Summary: This study isolated a variety of cold-adapted, cellulose-degrading, and nitrate-reducing fungi that could assist in nitrate removal in woodchip bioreactors under low-temperature conditions. These fungi showed the ability to reduce nitrate to gaseous forms and had denitrification genes, potentially enhancing denitrification capability in bioreactors.
JOURNAL OF APPLIED MICROBIOLOGY
(2021)
Article
Plant Sciences
Jose Franco Da Cunha Leme Filho, Wade E. Thomason, Gregory K. Evanylo, Xunzhong Zhang, Michael S. Strickland, Bee K. Chim, Andre A. Diatta
Summary: Current trends in agriculture are moving towards more sustainable cultivation systems with higher efficiency of input use, including the Integrated Plant Nutrition System (IPNS) that combines inorganic, organic, and biological nutrient resources. This study evaluated the effects of different nutrient sources on corn growth and found that the combined use of humic acid compounds and biofertilizer influenced corn height and vigor, but the overall impact on grain yield was inconclusive.
JOURNAL OF PLANT NUTRITION
(2021)
Article
Ecology
Liping Qiu, Qian Zhang, Hansong Zhu, Peter B. Reich, Samiran Banerjee, Marcel G. A. van der Heijden, Michael J. Sadowsky, Satoshi Ishii, Xiaoxu Jia, Mingan Shao, Baoyuan Liu, Huan Jiao, Haiqiang Li, Xiaorong Wei
Summary: Soil erosion has a significant negative impact on soil microbial diversity and functionality, leading to lower microbial network complexity and changes in microbial community composition, with an increase in the relative abundances of some bacterial families involved in nitrogen cycling.
Article
Engineering, Environmental
Naveen Joseph, Jane Lucas, Nikhil Viswanath, Reed Findlay, Jim Sprinkle, Michael S. Strickland, Eric Winford, Alan S. Kolok
Summary: The United States National Forests are multi-use lands that support human recreation and cattle grazing. Fecal contamination in the Mink Creek watershed is found to be caused by human activities and unknown sources.
Review
Soil Science
Nouf Aldossari, Satoshi Ishii
Summary: Fungi play a key role in the nitrogen cycle by reducing nitrate and nitrite to gaseous nitrogen oxides. However, fungal N2O production may not be solely related to denitrification, and experiments should be carefully conducted to discriminate between different nitrate/nitrite reduction processes. Various analytical tools have been developed to study fungal denitrification, offering insights for future research opportunities.
SOIL BIOLOGY & BIOCHEMISTRY
(2021)
Article
Ecology
Ernest D. Osburn, Peter J. Hoch, Jane M. Lucas, Steven G. McBride, Michael S. Strickland
Summary: Soil biota are considered as a major factor influencing litter decomposition, but the exact mechanisms are unclear. This study found functional differences among decomposer communities, with functional breadth playing a more important role than home-field advantage. There is a relationship between microbial life-history strategies and litter decomposition functions. Home-field advantage is not evident under high functional breadth conditions. These findings provide insights into the mechanisms by which microbial communities influence leaf litter decomposition.
FUNCTIONAL ECOLOGY
(2022)
Article
Ecology
Steven G. McBride, Ernest D. Osburn, Jane M. Lucas, Julia S. Simpson, Taylor Brown, J. E. Barrett, Michael S. Strickland
Summary: Variation in microbial use of soil carbon compounds is a significant factor in biogeochemical processes and microbial community composition. This study found that the effects of low molecular weight-dissolved organic carbon and volatile organic compounds on soil chemistry and microbial communities differ, and volatile organic compounds may have a greater influence on microbial functions and composition under low moisture conditions.
Article
Soil Science
Jane M. Lucas, Bronte S. Sone, Dana Whitmore, Michael S. Strickland
Summary: Antibiotics and rising soil temperatures interact to disrupt bacterial assemblages and network structure, allowing for a rise in fungal dominance and change in soil nutrient stoichiometry. Antibiotics alone decrease bacterial diversity, abundance, total extractable N, and microbial carbon use efficiency, while increasing bioavailable C. Higher temperatures independently homogenize fungal community composition, decrease dissolved organic C and increase soil respiration rates.
SOIL BIOLOGY & BIOCHEMISTRY
(2021)
Article
Biotechnology & Applied Microbiology
Mamoru Oshiki, Komei Nagai, Satoshi Ishii, Yoshiyuki Suzuki, Nobuo Saito, Takashi Yamaguchi, Nobuo Araki, Satoshi Okabe
Summary: The nitrogen cycle is an essential process that involves the conversion of nitrogenous compounds to different nitrogen species. The N-15 labeling approach is a powerful technique to study nitrogen transformation reactions in cultures. A simple and high-throughput mass spectrometry method was developed to determine the N-15 atoms percent of various nitrogen species in liquid samples.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2022)
Article
Soil Science
Ayush Joshi Gyawali, Michael S. Strickland, Wade Thomason, Mark Reiter, Ryan Stewart
Summary: The main objective of this research was to identify soil health parameters that showed measurable and consistent responses to reduced tillage and cover cropping over a short study period. The results showed that soil aggregate stability, potassium, calcium, magnesium, boron and cash crop yield were the most responsive parameters to reduced tillage and cover crop practices, while aggregate stability also showed high consistency.
SOIL & TILLAGE RESEARCH
(2022)
Article
Soil Science
Ernest D. Osburn, Peter J. Hoch, Chelse M. Prather, Michael S. Strickland
Summary: Fertilization with macronutrients (N + P) has significant effects on soil carbon cycling, while the impacts of micronutrients (such as Ca and K) are relatively smaller but still influence the carbon cycling functions of soil microbial communities and the size of soil carbon pools.
APPLIED SOIL ECOLOGY
(2023)
Review
Engineering, Environmental
Zhiyue Wang, Satoshi Ishii, Paige J. Novak
Summary: Encapsulation of microorganisms shows promising potential for enhancing biological nitrogen removal in wastewater treatment, offering benefits such as increased efficiency, reduced inhibition, and improved stability. However, further research is needed to understand interactions between encapsulated microorganisms and between microorganisms and their surrounding matrices, as well as to evaluate the stability and permeability of encapsulation materials under realistic wastewater treatment conditions.
ENVIRONMENTAL SCIENCE-WATER RESEARCH & TECHNOLOGY
(2021)
Article
Soil Science
C. Beraud, F. Piola, J. Gervaix, G. Meiffren, C. Creuze des Chatelliers, A. Delort, C. Boisselet, S. Poussineau, E. Lacroix, A. A. M. Cantarel
Summary: This study investigated the soil factors influencing the development of biological denitrification inhibition (BDI) and found that initial soil moisture, ammonium concentration, and the initial abundance of certain microbial genes play significant roles in BDI development. Additionally, the research highlighted the relevance of biotic factors in explaining BDI and proposed the use of procyanidin concentration from plant belowground system as a new proxy for measuring BDI intensity.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Yizhu Qiao, Tingting Wang, Qiwei Huang, Hanyue Guo, He Zhang, Qicheng Xu, Qirong Shen, Ning Ling
Summary: Soil microbial community coalescence, the mixing and interaction of microbial communities, has been found to enhance the stability and complexity of rhizobacterial networks, leading to improved plant health and biomass. This study investigated the effects of different degrees of bacterial community coalescence on plant disease resistance by mixing soils from healthy and diseased habitats for watermelon planting. The results showed that mixing in more healthy soil reduced the plant disease index and increased biomass by improving the stability and complexity of the rhizobacterial network. Core taxa Nitrospirillum and Singulisphaera were enriched in the rhizosphere from healthy soils and played important roles in disease suppression and regulating the positive cohesion and modularity of the networks. Overall, these findings provide insights into the potential mechanism of microbial community coalescence for improving plant microbial community function and suggest new tools for enhancing plant fitness via soil microbiota mixing.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Mengqiu He, Shending Chen, Lei Meng, Xiaoqian Dan, Wenjie Wang, Qinying Zhu, Zucong Cai, Jinbo Zhang, Pierfrancesco Nardi, Christoph Mueller
Summary: Maize genotypes directly affect gene expression and nitrogen uptake capacity. The feedback between maize genotypes and soil nitrogen transformations, as well as their regulations on nitrogen uptake capacity, have been studied. The findings suggest that maize genotypes play a central role in regulating these feedbacks, which are important for maize breeding and enhancing maize production.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Ke Shi, Jiahui Liao, Xiaoming Zou, Han Y. H. Chen, Manuel Delgado-Baquerizo, Zhengming Yan, Tingting Ren, Honghua Ruan
Summary: Through rewilding, microbial extracellular and cellular residues can continuously accumulate in soils and significantly contribute to soil organic carbon sequestration. Extracellular residues are mainly driven by fine root biomass, while cellular residues are mainly driven by soil nitrogen and organic carbon content.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Sensen Chen, Ying Teng, Yongming Luo, Eiko Kuramae, Wenjie Ren
Summary: This study comprehensively assesses the effects of NMs on the soil microbiome through a global meta-analysis. The results reveal significant negative impacts of NMs on soil microbial diversity, biomass, activity, and function. Metal NMs, especially Ag NMs, have the most pronounced negative effects on various soil microbial community metrics.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Shareen K. D. Sanders, Gerard Martinez-De Leon, Ludovico Formenti, Madhav P. Thakur
Summary: Collembolans, the diverse group of soil invertebrates, are affected by anthropogenic climate warming, which alters their diversity and density. In addition to abiotic stressors, changes in food availability, specifically the abundance of saprotrophic and mycorrhizal fungi, influence Collembola responses to climate warming. Collembolans prefer saprotrophic fungi but rely on mycorrhizal fungi when food sources are scarce. Understanding the mechanisms behind these dietary shifts in warm-dry and warm-wet soil conditions is crucial for predicting the impact of climate change on Collembola-fungal interactions.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Wimonsiri Pingthaisong, Sergey Blagodatsky, Patma Vityakon, Georg Cadisch
Summary: A study found that mixing high-C/N ratio rice straw with low-C/N ratio groundnut stover can improve the chemical composition of the input, stimulate microbial growth, decrease the loss of residue-derived carbon in the soil, and reduce native soil carbon and nitrogen consumption.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)
Article
Soil Science
Jiachen Wang, Jie Zhao, Rong Yang, Xin Liu, Xuyuan Zhang, Wei Zhang, Xiaoyong Chen, Wende Yan, Kelin Wang
Summary: Nitrogen is vital for ecosystem productivity, restoration, and succession processes. This study found that legume intercropping was more effective than chemical nitrogen fertilizers in promoting the complexity and stability of the soil micro-food web, as it increased microbial and nematode communities and enhanced energy flow patterns.
SOIL BIOLOGY & BIOCHEMISTRY
(2024)