Long-term N inputs shape microbial communities more strongly than current-year inputs in soils under 10-year continuous corn cropping

Altered soil organic matter composition and degradation after a decade of nitrogen fertilization in a temperate agroecosystem

(2021) Meiling Man et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Root-Associated Endophytic Bacterial Community Composition of Asparagus officinalis of Three Different Varieties

(2021) Zhuowen Su et al.   INDIAN JOURNAL OF MICROBIOLOGY

A comparison between fatty acid methyl ester profiling methods (PLFA and EL‐FAME) as soil health indicators

(2020) Chenhui Li et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Bacterial Blight Induced Shifts in Endophytic Microbiome of Rice Leaves and the Enrichment of Specific Bacterial Strains With Pathogen Antagonism

(2020) Fenghuan Yang et al.   Frontiers in Plant Science

Responses of arbuscular mycorrhizal fungi to nitrogen addition: A meta‐analysis

(2020) Yunfeng Han et al.   GLOBAL CHANGE BIOLOGY

Response of the arbuscular mycorrhizal fungi diversity and community in maize and soybean rhizosphere soil and roots to intercropping systems with different nitrogen application rates

(2020) Runzhi Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effect of Inorganic N Top Dressing and Trichoderma harzianum Seed-Inoculation on Crop Yield and the Shaping of Root Microbial Communities of Wheat Plants Cultivated Under High Basal N Fertilization

(2020) María Illescas et al.   Frontiers in Plant Science

Identification and characterization of Vietnamese coffee bacterial endophytes displaying in vitro antifungal and nematicidal activities

(2020) Benoit Duong et al.   MICROBIOLOGICAL RESEARCH

Variations in soil bacterial taxonomic profiles and putative functions in response to straw incorporation combined with N fertilization during the maize growing season

(2019) Hui Li et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Long-term nitrogen addition changes soil microbial community and litter decomposition rate in a subtropical forest

(2019) Jianping Wu et al.   APPLIED SOIL ECOLOGY

Nitrogen input through chemical and biological pathway affects arbuscular mycorrhizal fungal communities in forage grass cultivation in southwest China

(2019) Dan Xiao et al.   APPLIED SOIL ECOLOGY

Interactions between soil properties, fungal communities, the soybean cyst nematode, and crop yield under continuous corn and soybean monoculture

(2019) Noah Strom et al.   APPLIED SOIL ECOLOGY

Analysis of leaf microbiome composition of near‐isogenic maize lines differing in broad‐spectrum disease resistance

(2019) Maggie R. Wagner et al.   NEW PHYTOLOGIST

Effect of nitrogen source, placement and timing on the environmental performance of economically optimum nitrogen rates in maize

(2019) Joshua Nasielski et al.   FIELD CROPS RESEARCH

Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems

(2019) Zhongmin Dai et al.   ISME Journal

Long-term fertilization changes bacterial diversity and bacterial communities in the maize rhizosphere of Chinese Mollisols

(2018) Qingfeng Wang et al.   APPLIED SOIL ECOLOGY

Distinct responses of soil bacterial and fungal communities to changes in fertilization regime and crop rotation

(2018) Chao Ai et al.   GEODERMA

Microbial communities in soil profile are more responsive to legacy effects of wheat-cover crop rotations than tillage systems

(2018) Anil Somenahally et al.   SOIL BIOLOGY & BIOCHEMISTRY

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Direct and indirect effects of nitrogen enrichment on soil organisms and carbon and nitrogen mineralization in a semi-arid grassland

(2018) Dima Chen et al.   FUNCTIONAL ECOLOGY

Changes in litter quality induced by N deposition alter soil microbial communities

(2018) Yingbin Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

A 30-years vineyard trial: Plant communities, soil microbial communities and litter decomposition respond more to soil treatment than to N fertilization

(2018) Martin Pingel et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Organic fertilizers alter the composition of pathogens and arbuscular mycorrhizal fungi in maize roots

(2017) Ricardo Aguilar et al.   JOURNAL OF PHYTOPATHOLOGY

Response to nitrogen addition reveals metabolic and ecological strategies of soil bacteria

(2017) Md Sainur Samad et al.   MOLECULAR ECOLOGY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Bacterial and archaeal ammonia oxidizers respond differently to long-term tillage and fertilizer management at a continuous maize site

(2017) Lauren M. Segal et al.   SOIL & TILLAGE RESEARCH

Impact of 25 years of inorganic fertilization on diazotrophic abundance and community structure in an acidic soil in southern China

(2017) Chao Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Critical Issues in Mycobiota Analysis

(2017) Bettina Halwachs et al.   Frontiers in Microbiology

Balance Trees Reveal Microbial Niche Differentiation

(2017) James T. Morton et al.   mSystems

Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae

(2017) Renata de A. B. Assis et al.   Scientific Reports

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Nitrogen fertilization directly affects soil bacterial diversity and indirectly affects bacterial community composition

(2016) Jun Zeng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China

(2016) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Ecology of Acidobacteria: Moving beyond Genes and Genomes

(2016) Anna M. Kielak et al.   Frontiers in Microbiology

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Analysis of microbial taxonomical groups present in maize stalks suppressive to colonization by toxigenic Fusarium spp.: A strategy for the identification of potential antagonists

(2015) Jürgen Köhl et al.   BIOLOGICAL CONTROL

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

A Greenhouse Assay on the Effect of Applied Urea Amount on the Rhizospheric Soil Bacterial Communities

(2015) Shuanghua Shang et al.   INDIAN JOURNAL OF MICROBIOLOGY

Managing nitrogen for sustainable development

(2015) Xin Zhang et al.   NATURE

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere

(2015) Chanyarat Paungfoo-Lonhienne et al.   Scientific Reports

Diversity of endophytic bacteria in Lolium perenne and their potential to degrade petroleum hydrocarbons and promote plant growth

(2014) M. Kukla et al.   CHEMOSPHERE

Long-term effects of mineral fertilizers on soil microorganisms – A review

(2014) Daniel Geisseler et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparative Genomic Analysis of N2-Fixing and Non-N2-Fixing Paenibacillus spp.: Organization, Evolution and Expression of the Nitrogen Fixation Genes

(2014) Jian-Bo Xie et al.   PLoS Genetics

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

(2014) Andrew D Fernandes et al.   Microbiome

Consequences of human modification of the global nitrogen cycle

(2013) J. W. Erisman et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Long-Term Experimental Nitrogen Deposition Alters the Composition of the Active Fungal Community in the Forest Floor

(2013) Elizabeth M. Entwistle et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Impact of long-term nitrogen fertilization and rotation with soybean on the diversity and phosphorus metabolism of indigenous arbuscular mycorrhizal fungi within the roots of maize (Zea mays L.)

(2012) H. Tian et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Microbial Mechanisms Mediating Increased Soil C Storage under Elevated Atmospheric N Deposition

(2012) Sarah D. Eisenlord et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Long-term effect of tillage, nitrogen fertilization and cover crops on soil organic carbon and total nitrogen content

(2011) Marco Mazzoncini et al.   SOIL & TILLAGE RESEARCH

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems

(2010) Kelly S. Ramirez et al.   ECOLOGY

The effect of nutrient deposition on bacterial communities in Arctic tundra soil

(2010) Barbara J. Campbell et al.   ENVIRONMENTAL MICROBIOLOGY

Responses of ecosystem nitrogen cycle to nitrogen addition: a meta-analysis

(2010) Meng Lu et al.   NEW PHYTOLOGIST

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Distribution of nitrogen-fixing cyanobacteria (Nostocaceae) during rice cultivation in fertilized and unfertilized paddy fields

(2009) Kaushal Kishore Choudhary et al.   NORDIC JOURNAL OF BOTANY

Changes in microbial community structure in soil as a result of different amounts of nitrogen fertilization

(2008) Ilya Yevdokimov et al.   BIOLOGY AND FERTILITY OF SOILS

Nitrogen additions and microbial biomass: a meta-analysis of ecosystem studies

(2008) Kathleen K. Treseder   ECOLOGY LETTERS