Biochar application enhances microbial interactions in mega-aggregates of farmland black soil

Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed

(2020) Hyun Kim et al.   Microbiome

Long-term effects of straw return and straw-derived biochar amendment on bacterial communities in soil aggregates

(2020) Naling Bai et al.   Scientific Reports

Biochar and Rhizobacteria Amendments Improve Several Soil Properties and Bacterial Diversity

(2020) Han Ren et al.   Microorganisms

Effects of Lactobacillus plantarum additive and temperature on the ensiling quality and microbial community dynamics of cauliflower leaf silages

(2020) Haiwei Ren et al.   BIORESOURCE TECHNOLOGY

Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems

(2020) Yu Shi et al.   ENVIRONMENT INTERNATIONAL

Long-term effects of straw and straw-derived biochar on soil aggregation and fungal community in a rice–wheat rotation system

(2019) Naling Bai et al.   PeerJ

Soil aggregate microbial communities: Towards understanding microbiome interactions at biologically relevant scales

(2019) Regina L. Wilpiszeski et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Competitive interaction with keystone taxa induced negative priming under biochar amendments

(2019) Lijun Chen et al.   Microbiome

Soil aggregate size modifies the impacts of fertilization on microbial communities

(2019) Fengqiao Li et al.   GEODERMA

Long-term manure application increases soil organic matter and aggregation, and alters microbial community structure and keystone taxa

(2019) Yongxin Lin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biochar decreases soil N2O emissions in Moso bamboo plantations through decreasing labile N concentrations, N-cycling enzyme activities and nitrification/denitrification rates

(2019) Yuze Song et al.   GEODERMA

Effects of different corn straw amendments on humus composition and structural characteristics of humic acid in black soil

(2019) Xiaowei Zhang et al.   COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS

Interactions between biochar and nitrogen impact soil carbon mineralization and the microbial community

(2019) Shuailin Li et al.   SOIL & TILLAGE RESEARCH

The influence of aggregate size fraction and horizon position on microbial community composition

(2018) Aaron Fox et al.   APPLIED SOIL ECOLOGY

Keystone taxa predict compositional change in microbial communities

(2018) Cristina M. Herren et al.   ENVIRONMENTAL MICROBIOLOGY

Aggregate-related changes in soil microbial communities under different ameliorant applications in saline-sodic soils

(2018) Shasha Luo et al.   GEODERMA

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Biochar-induced negative carbon mineralization priming effects in a coastal wetland soil: Roles of soil aggregation and microbial modulation

(2018) Hao Zheng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Responses of soil microbial community structure changes and activities to biochar addition: A meta-analysis

(2018) Leiyi Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Biochar reduces soil heterotrophic respiration in a subtropical plantation through increasing soil organic carbon recalcitrancy and decreasing carbon-degrading microbial activity

(2018) Yongchun Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil fungal taxonomic and functional community composition as affected by biochar properties

(2018) Zhongmin Dai et al.   SOIL BIOLOGY & BIOCHEMISTRY

Response of microbial communities and enzyme activities to amendments in saline-alkaline soils

(2018) Shaohua Shi et al.   APPLIED SOIL ECOLOGY

Soil aggregation and associated microbial communities modify the impact of agricultural management on carbon content

(2017) Pankaj Trivedi et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of biochar application in forest ecosystems on soil properties and greenhouse gas emissions: a review

(2017) Yongfu Li et al.   JOURNAL OF SOILS AND SEDIMENTS

Co-Variation of Bacterial and Fungal Communities in Different Sorghum Cultivars and Growth Stages is Soil Dependent

(2017) Thiago R. Schlemper et al.   MICROBIAL ECOLOGY

Impact of a pesticide cocktail (fenhexamid, folpel, deltamethrin) on the abundance of Glomeromycota in two agricultural soils

(2017) Facundo Rivera-Becerril et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Three years of biochar amendment alters soil physiochemical properties and fungal community composition in a black soil of northeast China

(2017) Qin Yao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Linking the Belowground Microbial Composition, Diversity and Activity to Soilborne Disease Suppression and Growth Promotion of Tomato Amended with Biochar

(2017) Amit K. Jaiswal et al.   Scientific Reports

Sensitivities to nitrogen and water addition vary among microbial groups within soil aggregates in a semiarid grassland

(2016) Ruzhen Wang et al.   BIOLOGY AND FERTILITY OF SOILS

Effect of biochar additions to soil on nitrogen leaching, microbial biomass and bacterial community structure

(2016) Nan Xu et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.

(2016) Alejandro Palomo et al.   ISME Journal

Bacteria and fungi can contribute to nutrients bioavailability and aggregate formation in degraded soils

(2016) Muhammad Imtiaz Rashid et al.   MICROBIOLOGICAL RESEARCH

Biochar decreased microbial metabolic quotient and shifted community composition four years after a single incorporation in a slightly acid rice paddy from southwest China

(2016) Jufeng Zheng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Physico-chemical properties and microbial responses in biochar-amended soils: Mechanisms and future directions

(2015) Shamim Gul et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Consistent increase in abundance and diversity but variable change in community composition of bacteria in topsoil of rice paddy under short term biochar treatment across three sites from South China

(2015) Junhui Chen et al.   APPLIED SOIL ECOLOGY

Taxon-specific responses of soil microbial communities to different soil priming effects induced by addition of plant residues and their biochars

(2015) Peng Su et al.   JOURNAL OF SOILS AND SEDIMENTS

Soil carbon content drives the biogeographical distribution of fungal communities in the black soil zone of northeast China

(2015) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Carbon and Nitrogen Dynamics in Soil Aggregates under Long-Term Nitrogen and Water Addition in a Temperate Steppe

(2015) Ruzhen Wang et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Generic concepts in Nectriaceae

(2015) L. Lombard et al.   STUDIES IN MYCOLOGY

Differential Response of Acidobacteria Subgroups to Forest-to-Pasture Conversion and Their Biogeographic Patterns in the Western Brazilian Amazon

(2015) Acacio A. Navarrete et al.   Frontiers in Microbiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Copper radical oxidases and related extracellular oxidoreductases of wood-decay Agaricomycetes

(2014) Phil Kersten et al.   FUNGAL GENETICS AND BIOLOGY

Mizugakiibacter sediminis gen. nov., sp. nov., isolated from a freshwater lake

(2014) H. Kojima et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Microbial community and functional diversity associated with different aggregate fractions of a paddy soil fertilized with organic manure and/or NPK fertilizer for 20 years

(2014) Xiaofen Chen et al.   JOURNAL OF SOILS AND SEDIMENTS

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Nitrous oxide producing activity of diverse fungi from distinct agroecosystems

(2013) Nape V. Mothapo et al.   SOIL BIOLOGY & BIOCHEMISTRY

N2O emission from cropland field soil through fungal denitrification after surface applications of organic fertilizer

(2013) Wei Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile

(2012) Julia W. Neilson et al.   EXTREMOPHILES

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Microbial community composition and carbon cycling within soil microenvironments of conventional, low-input, and organic cropping systems

(2010) Angela Y.Y. Kong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals

(2010) Mahmoud A. Ghannoum et al.   PLoS Pathogens