Bacterial community assembly and antibiotic resistance genes in the lettuce-soil system upon antibiotic exposure

Legacy effects of 8-year nitrogen inputs on bacterial assemblage in wheat rhizosphere

(2020) Wenbo Liu et al.   BIOLOGY AND FERTILITY OF SOILS

Gene interaction network studies to decipher the multi-drug resistance mechanism in Salmonella enterica serovar Typhi CT18 reveal potential drug targets

(2020) Reetika Debroy et al.   MICROBIAL PATHOGENESIS

Antibiotic Resistomes in Plant Microbiomes

(2019) Qing-Lin Chen et al.   TRENDS IN PLANT SCIENCE

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

A general framework for quantitatively assessing ecological stochasticity

(2019) Daliang Ning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pharmaceutical exposure changed antibiotic resistance genes and bacterial communities in soil-surface- and overhead-irrigated greenhouse lettuce

(2019) Yike Shen et al.   ENVIRONMENT INTERNATIONAL

Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons

(2019) Weidong Chen et al.   Microbiome

Compost-bulking agents reduce the reservoir of antibiotics and antibiotic resistance genes in manures by modifying bacterial microbiota

(2018) Jin Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Characterization of antibiotic resistant and pathogenic Escherichia coli in irrigation water and vegetables in household farms

(2017) Susana Araújo et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Microbial mass movements

(2017) Yong-Guan Zhu et al.   SCIENCE

Antibiotic Concentrations Decrease during Wastewater Treatment but Persist at Low Levels in Reclaimed Water

(2017) Prachi Kulkarni et al.   International Journal of Environmental Research and Public Health

Continental-scale pollution of estuaries with antibiotic resistance genes

(2017) Yong-Guan Zhu et al.   Nature Microbiology

Impacts of reclaimed water irrigation on soil antibiotic resistome in urban parks of Victoria, Australia

(2016) Xue-Mei Han et al.   ENVIRONMENTAL POLLUTION

Diversity is the question, not the answer

(2016) Ashley Shade   ISME Journal

Uptake of Three Antibiotics and an Antiepileptic Drug by Wheat Crops Spray Irrigated with Wastewater Treatment Plant Effluent

(2016) Alison M. Franklin et al.   JOURNAL OF ENVIRONMENTAL QUALITY

How Should Beta-Diversity Inform Biodiversity Conservation?

(2016) Jacob B. Socolar et al.   TRENDS IN ECOLOGY & EVOLUTION

The Ecology and Evolution of Microbial Competition

(2016) Melanie Ghoul et al.   TRENDS IN MICROBIOLOGY

Do tradeoffs structure antibiotic inhibition, resistance, and resource use among soil-borne Streptomyces?

(2015) Daniel C. Schlatter et al.   BMC EVOLUTIONARY BIOLOGY

Agriculture and food animals as a source of antimicrobial-resistant bacteria

(2015) Vangelis Economou et al.   Infection and Drug Resistance

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The plant microbiome and its importance for plant and human health

(2014) Gabriele Berg   Frontiers in Microbiology

Vegetable microbiomes: is there a connection among opportunistic infections, human health and our ‘gut feeling'?

(2014) Gabriele Berg et al.   Microbial Biotechnology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temporal variability in soil microbial communities across land-use types

(2013) Christian L Lauber et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Diverse and abundant antibiotic resistance genes in Chinese swine farms

(2013) Yong-Guan Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale

(2011) Tancredi Caruso et al.   ISME Journal

The importance of vegetables in ensuring both food and nutritional security in attainment of the Millennium Development Goals

(2011) J. D. H. Keatinge et al.   Food Security

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Origins and Evolution of Antibiotic Resistance

(2010) J. Davies et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Call of the wild: antibiotic resistance genes in natural environments

(2010) Heather K. Allen et al.   NATURE REVIEWS MICROBIOLOGY

Increased Pollution-Induced Bacterial Community Tolerance to Sulfadiazine in Soil Hotspots Amended with Artificial Root Exudates

(2009) Kristian K. Brandt et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Development and Experimental Validation of a Predictive Threshold Cycle Equation for Quantification of Virulence and Marker Genes by High-Throughput Nanoliter-Volume PCR on the OpenArray Platform

(2008) R. D. Stedtfeld et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots

(2008) Brajesh K. Singh et al.   ENVIRONMENTAL MICROBIOLOGY