Estimating epidemiologic dynamics from cross-sectional viral load distributions

Test sensitivity is secondary to frequency and turnaround time for COVID-19 screening

(2021) Daniel B. Larremore et al.   Science Advances

S-variant SARS-CoV-2 lineage B1.1.7 is associated with significantly higher viral loads in samples tested by ThermoFisher TaqPath RT-qPCR

(2021) Michael Kidd et al.   JOURNAL OF INFECTIOUS DISEASES

Estimating the effectiveness of routine asymptomatic PCR testing at different frequencies for the detection of SARS-CoV-2 infections

(2021) Joel Hellewell et al.   BMC Medicine

Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

(2021) Nuno R. Faria et al.   SCIENCE

Arguments in favor of remdesivir for treating SARS-CoV-2 infections

(2020) Wen-Chien Ko et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Defining the Epidemiology of Covid-19 — Studies Needed

(2020) Marc Lipsitch et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Incubation Period of Coronavirus Disease 2019 (COVID-19) From Publicly Reported Confirmed Cases: Estimation and Application

(2020) Stephen A. Lauer et al.   ANNALS OF INTERNAL MEDICINE

Profile of RT-PCR for SARS-CoV-2: a preliminary study from 56 COVID-19 patients

(2020) Ai Tang Xiao et al.   CLINICAL INFECTIOUS DISEASES

To Interpret the SARS-CoV-2 Test, Consider the Cycle Threshold Value

(2020) Michael R Tom et al.   CLINICAL INFECTIOUS DISEASES

Predicting infectious SARS-CoV-2 from diagnostic samples

(2020) Jared Bullard et al.   CLINICAL INFECTIOUS DISEASES

Real-time RT-PCR in COVID-19 detection: issues affecting the results

(2020) Alireza Tahamtan et al.   EXPERT REVIEW OF MOLECULAR DIAGNOSTICS

Prolonged SARS‐CoV‐2 RNA shedding: Not a rare phenomenon

(2020) Na Li et al.   JOURNAL OF MEDICAL VIROLOGY

SARS-CoV-2: virus dynamics and host response

(2020) Yu Chen et al.   LANCET INFECTIOUS DISEASES

Temporal profiles of viral load in posterior oropharyngeal saliva samples and serum antibody responses during infection by SARS-CoV-2: an observational cohort study

(2020) Kelvin Kai-Wang To et al.   LANCET INFECTIOUS DISEASES

Pathogenesis and transmission of SARS-CoV-2 in golden hamsters

(2020) Sin Fun Sia et al.   NATURE

Virological assessment of hospitalized patients with COVID-2019

(2020) Roman Wölfel et al.   NATURE

Temporal dynamics in viral shedding and transmissibility of COVID-19

(2020) Xi He et al.   NATURE MEDICINE

Presymptomatic SARS-CoV-2 Infections and Transmission in a Skilled Nursing Facility

(2020) Melissa M. Arons et al.   NEW ENGLAND JOURNAL OF MEDICINE

Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing

(2020) Luca Ferretti et al.   SCIENCE

SARS-CoV-2 infection protects against rechallenge in rhesus macaques

(2020) Abishek Chandrashekar et al.   SCIENCE

DNA vaccine protection against SARS-CoV-2 in rhesus macaques

(2020) Jingyou Yu et al.   SCIENCE

An open source tool to infer epidemiological and immunological dynamics from serological data: serosolver

(2020) James A. Hay et al.   PLoS Computational Biology

Quantifying antibiotic impact on within-patient dynamics of extended-spectrum beta-lactamase resistance

(2020) Rene Niehus et al.   eLife

Effect of changing case definitions for COVID-19 on the epidemic curve and transmission parameters in mainland China: a modelling study

(2020) Tim K Tsang et al.   Lancet Public Health

Viral RNA load as determined by cell culture as a management tool for discharge of SARS-CoV-2 patients from infectious disease wards

(2020) Bernard La Scola et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Duration of infectiousness and correlation with RT-PCR cycle threshold values in cases of COVID-19, England, January to May 2020

(2020) Anika Singanayagam et al.   Eurosurveillance

Accounting for incomplete testing in the estimation of epidemic parameters

(2020) Rebecca A Betensky et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Clinical recurrences of COVID-19 symptoms after recovery: viral relapse, reinfection or inflammatory rebound?

(2020) Dominique Batisse et al.   JOURNAL OF INFECTION

Viral dynamics in mild and severe cases of COVID-19

(2020) Yang Liu et al.   LANCET INFECTIOUS DISEASES

Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe

(2020) Seth Flaxman et al.   NATURE

Clinical and immunological assessment of asymptomatic SARS-CoV-2 infections

(2020) Quan-Xin Long et al.   NATURE MEDICINE

A Global lmmunological Observatory to meet a time of pandemics

(2020) Michael J Mina et al.   eLife

College of American Pathologists (CAP) Microbiology Committee Perspective: Caution Must Be Used in Interpreting the Cycle Threshold (Ct) Value

(2020) Daniel Rhoads et al.   CLINICAL INFECTIOUS DISEASES

SARS-CoV-2 detection, viral load and infectivity over the course of an infection

(2020) Kieran A. Walsh et al.   JOURNAL OF INFECTION

Viral load of SARS-CoV-2 across patients and compared to other respiratory viruses

(2020) Damien Jacot et al.   MICROBES AND INFECTION

Experimental infection of domestic dogs and cats with SARS-CoV-2: Pathogenesis, transmission, and response to reexposure in cats

(2020) Angela M. Bosco-Lauth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying antibody kinetics and RNA detection during early-phase SARS-CoV-2 infection by time since symptom onset

(2020) Benny Borremans et al.   eLife

Covid-19: What have we learnt about the new variant in the UK?

(2020) Elisabeth Mahase   BMJ-British Medical Journal

Practical considerations for measuring the effective reproductive number, Rt

(2020) Katelyn M. Gostic et al.   PLoS Computational Biology

Reconstruction of antibody dynamics and infection histories to evaluate dengue risk

(2018) Henrik Salje et al.   NATURE

Bayesian non-parametric inference for stochastic epidemic models using Gaussian Processes

(2016) Xiaoguang Xu et al.   BIOSTATISTICS

Estimating Time of Infection Using Prior Serological and Individual Information Can Greatly Improve Incidence Estimation of Human and Wildlife Infections

(2016) Benny Borremans et al.   PLoS Computational Biology

Using Combined Diagnostic Test Results to Hindcast Trends of Infection from Cross-Sectional Data

(2016) Gustaf Rydevik et al.   PLoS Computational Biology

Influenza A Virus Shedding and Infectivity in Households

(2015) Tim K. Tsang et al.   JOURNAL OF INFECTIOUS DISEASES

Novel serologic biomarkers provide accurate estimates of recentPlasmodium falciparumexposure for individuals and communities

(2015) Danica A. Helb et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlation of Real Time PCR Cycle Threshold Cut-Off with Bordetella pertussis Clinical Severity

(2015) Shelly Bolotin et al.   PLoS One

Association of the CTvalues of real-time PCR of viral upper respiratory tract infection with clinical severity, Kenya

(2013) James A. Fuller et al.   JOURNAL OF MEDICAL VIROLOGY

Biomarker dynamics: estimating infection rates from serological data

(2012) PFM Teunis et al.   STATISTICS IN MEDICINE

Epidemic Science in Real Time

(2009) H. V. Fineberg et al.   SCIENCE

Estimation of incidences of infectious diseases based on antibody measurements

(2009) J. Simonsen et al.   STATISTICS IN MEDICINE