Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study

Bacterial Immunogenicity Is Critical for the Induction of Regulatory B Cells in Suppressing Inflammatory Immune Responses

(2020) Jan Kevin Maerz et al.   Frontiers in Immunology

Comparative Study of Salivary, Duodenal, and Fecal Microbiota Composition Across Adult Celiac Disease

(2020) Simona Panelli et al.   Journal of Clinical Medicine

Increased Intestinal Permeability is Associated with Later Development of Crohn’s Disease

(2020) Williams Turpin et al.   GASTROENTEROLOGY

Alterations in Intestinal Microbiota of Children With Celiac Disease at Time of Diagnosis and on a Gluten-Free Diet

(2020) Konstantina Zafeiropoulou et al.   GASTROENTEROLOGY

Gut microbiota signatures and clinical manifestations in celiac disease children at onset: a pilot study

(2020) Anna Rita Di Biase et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

(2020) Maureen M. Leonard et al.   Microbiome

Bacteroides vulgatus and Bacteroides dorei Reduce Gut Microbial Lipopolysaccharide Production and Inhibit Atherosclerosis

(2019) Naofumi Yoshida et al.   CIRCULATION

Mitochondria: the indispensable players in innate immunity and guardians of the inflammatory response

(2019) Abhishek Mohanty et al.   Journal of Cell Communication and Signaling

Alterations of gut microbiome in autoimmune hepatitis

(2019) Yiran Wei et al.   GUT

RNA sequencing of intestinal mucosa reveals novel pathways functionally linked to celiac disease pathogenesis

(2019) Maureen M. Leonard et al.   PLoS One

Exploring the Science behind Bifidobacterium breve M-16V in Infant Health

(2019) Chyn Boon Wong et al.   Nutrients

European Society Paediatric Gastroenterology, Hepatology and Nutrition Guidelines for Diagnosing Coeliac Disease 2019

(2019) Steffen Husby et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research

(2019) M. Poyet et al.   NATURE MEDICINE

Differences in Gut Microbiota in Patients With vs Without Inflammatory Bowel Diseases: A Systematic Review

(2019) Rapat Pittayanon et al.   GASTROENTEROLOGY

Clinical intervention using Bifidobacterium strains in celiac disease children reveals novel microbial modulators of TNF-α and short-chain fatty acids

(2018) Maša Primec et al.   CLINICAL NUTRITION

Interrogating the microbiome: experimental and computational considerations in support of study reproducibility

(2018) Carine Poussin et al.   DRUG DISCOVERY TODAY

The Modulatory Roles of N-glycans in T-Cell-Mediated Autoimmune Diseases

(2018) Ming-Wei Chien et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Multiple sclerosis

(2018) Alan J Thompson et al.   LANCET

Type 1 diabetes

(2018) Linda A DiMeglio et al.   LANCET

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

(2018) Jasmine Chong et al.   NUCLEIC ACIDS RESEARCH

Impact of the Gut Microbiota on Intestinal Immunity Mediated by Tryptophan Metabolism

(2018) Jing Gao et al.   Frontiers in Cellular and Infection Microbiology

Gut microbiota trajectory in early life may predict development of celiac disease

(2018) Marta Olivares et al.   Microbiome

Propionate-producing bacteria in the intestine may associate with skewed responses of IL10-producing regulatory T cells in patients with relapsing polychondritis

(2018) Jun Shimizu et al.   PLoS One

P31–43, an undigested gliadin peptide, mimics and enhances the innate immune response to viruses and interferes with endocytic trafficking: a role in celiac disease

(2018) Merlin Nanayakkara et al.   Scientific Reports

A metagenomic study of the gut microbiome in Behcet’s disease

(2018) Zi Ye et al.   Microbiome

The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

(2018) Tommi Vatanen et al.   NATURE

Temporal development of the gut microbiome in early childhood from the TEDDY study

(2018) Christopher J. Stewart et al.   NATURE

Review: Metabolic Control of Immune System Activation in Rheumatic Diseases

(2017) Andras Perl   Arthritis & Rheumatology

Aggravation of collagen-induced arthritis by orally administered Porphyromonas gingivalis through modulation of the gut microbiota and gut immune system

(2017) Keisuke Sato et al.   Scientific Reports

Coenzyme Q biosynthesis in health and disease

(2016) Manuel Jesús Acosta et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Comparative genomics of Clostridium bolteae and Clostridium clostridioforme reveals species-specific genomic properties and numerous putative antibiotic resistance determinants

(2016) Pierre Dehoux et al.   BMC GENOMICS

Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

(2016) Tommi Vatanen et al.   CELL

Toward Accurate and Quantitative Comparative Metagenomics

(2016) Stephen Nayfach et al.   CELL

Association between intestinal permeability and faecal microbiota composition in Italian children with beta cell autoimmunity at risk for type 1 diabetes

(2016) Claudio Maffeis et al.   DIABETES-METABOLISM RESEARCH AND REVIEWS

Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study

(2016) Barbara B Warner et al.   LANCET

The microbiome in early life: implications for health outcomes

(2016) Sabrina Tamburini et al.   NATURE MEDICINE

Imbalance of bacteriome profiles within the Finnish Diabetes Prediction and Prevention study: Parallel use of 16S profiling and virome sequencing in stool samples from children with islet autoimmunity and matched controls

(2016) Ondrej Cinek et al.   PEDIATRIC DIABETES

Cross-talk among flesh-eatingAeromonas hydrophilastrains in mixed infection leading to necrotizing fasciitis

(2016) Duraisamy Ponnusamy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alterations of the human gut microbiome in multiple sclerosis

(2016) Sushrut Jangi et al.   Nature Communications

The microbiome as a possible target to prevent celiac disease

(2016) Maureen M. Leonard et al.   Expert Review of Gastroenterology & Hepatology

Innate immunity: Actuating the gears of celiac disease pathogenesis

(2015) Sangman Michael Kim et al.   BEST PRACTICE & RESEARCH IN CLINICAL GASTROENTEROLOGY

Genetics of celiac disease

(2015) Isis Ricaño-Ponce et al.   BEST PRACTICE & RESEARCH IN CLINICAL GASTROENTEROLOGY

Celiac disease from a global perspective

(2015) Elena Lionetti et al.   BEST PRACTICE & RESEARCH IN CLINICAL GASTROENTEROLOGY

Administration of Bifidobacterium breve Decreases the Production of TNF-α in Children with Celiac Disease

(2015) Martina Klemenak et al.   DIGESTIVE DISEASES AND SCIENCES

Identification of an anti-inflammatory protein fromFaecalibacterium prausnitzii, a commensal bacterium deficient in Crohn’s disease

(2015) E Quévrain et al.   GUT

Dietary Fatty Acids Directly Impact Central Nervous System Autoimmunity via the Small Intestine

(2015) Aiden Haghikia et al.   IMMUNITY

Celiac Disease Genomic, Environmental, Microbiome, and Metabolomic (CDGEMM) Study Design: Approach to the Future of Personalized Prevention of Celiac Disease

(2015) Maureen Leonard et al.   Nutrients

Family studies of type 1 diabetes reveal additive and epistatic effects between MGAT1 and three other polymorphisms

(2014) Z Yu et al.   GENES AND IMMUNITY

The HLA-DQ2 genotype selects for early intestinal microbiota composition in infants at high risk of developing coeliac disease

(2014) M Olivares et al.   GUT

Intestinal Colonization by a Lachnospiraceae Bacterium Contributes to the Development of Diabetes in Obese Mice

(2014) Keishi Kameyama et al.   MICROBES AND ENVIRONMENTS

Commensal Gram-positive bacteria initiates colitis by inducing monocyte/macrophage mobilization

(2014) Y Nakanishi et al.   Mucosal Immunology

Introduction of Gluten, HLA Status, and the Risk of Celiac Disease in Children

(2014) Elena Lionetti et al.   NEW ENGLAND JOURNAL OF MEDICINE

Randomized Feeding Intervention in Infants at High Risk for Celiac Disease

(2014) Sabine L. Vriezinga et al.   NEW ENGLAND JOURNAL OF MEDICINE

Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing

(2014) Nur A. Hasan et al.   PLoS One

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes

(2014) Austin G. Davis-Richardson et al.   Frontiers in Microbiology

A decrease of the butyrate-producing speciesRoseburia hominisandFaecalibacterium prausnitziidefines dysbiosis in patients with ulcerative colitis

(2013) Kathleen Machiels et al.   GUT

Dysregulation of T cell receptor N-glycosylation: a molecular mechanism involved in ulcerative colitis

(2013) Ana M. Dias et al.   HUMAN MOLECULAR GENETICS

Longitudinal Analyses of Gut Mucosal Microbiotas in Ulcerative Colitis in Relation to Patient Age and Disease Severity and Duration

(2012) Alemu Fite et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Bifidobacterium longum CECT 7347 Modulates Immune Responses in a Gliadin-Induced Enteropathy Animal Model

(2012) José Moisés Laparra et al.   PLoS One

Proof of Concept of Microbiome-Metabolome Analysis and Delayed Gluten Exposure on Celiac Disease Autoimmunity in Genetically At-Risk Infants

(2012) Maria Sellitto et al.   PLoS One

Bacteroides uniformis CECT 7771 Ameliorates Metabolic and Immunological Dysfunction in Mice with High-Fat-Diet Induced Obesity

(2012) Paola Gauffin Cano et al.   PLoS One

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Duodenal and faecal microbiota of celiac children: molecular, phenotype and metabolome characterization

(2011) Raffaella Di Cagno et al.   BMC MICROBIOLOGY

Gut Microbiome Metagenomics Analysis Suggests a Functional Model for the Development of Autoimmunity for Type 1 Diabetes

(2011) Christopher T. Brown et al.   PLoS One

Diagnostic properties of metabolic perturbations in rheumatoid arthritis

(2011) Rasmus K Madsen et al.   ARTHRITIS RESEARCH & THERAPY

Genetics and the environment converge to dysregulate N-glycosylation in multiple sclerosis

(2011) Haik Mkhikian et al.   Nature Communications

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Intestinal Bacteroides species associated with coeliac disease

(2010) E. Sanchez et al.   JOURNAL OF CLINICAL PATHOLOGY

Dihydroxylated phenolic acids derived from microbial metabolism reduce lipopolysaccharide-stimulated cytokine secretion by human peripheral blood mononuclear cells

(2009) María Monagas et al.   BRITISH JOURNAL OF NUTRITION

Low counts of Faecalibacterium prausnitzii in colitis microbiota

(2009) H. Sokol et al.   INFLAMMATORY BOWEL DISEASES

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Evolutionarily conserved antigens in autoimmune disease: Implications for an infective aetiology

(2008) Natalia Wegner et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Specific duodenal and faecal bacterial groups associated with paediatric coeliac disease

(2008) M C Collado et al.   JOURNAL OF CLINICAL PATHOLOGY

Dysregulation of lipid and amino acid metabolism precedes islet autoimmunity in children who later progress to type 1 diabetes

(2008) Matej Orešič et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Bifidobacterium strains suppress in vitro the pro-inflammatory milieu triggered by the large intestinal microbiota of coeliac patients

(2008) Marcela Medina et al.   Journal of Inflammation-London

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

(2008) H. Sokol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA