Genome-wide prediction of cauliflower miRNAs and lncRNAs and their roles in post-transcriptional gene regulation

Comparative Analysis of miRNA Expression Profiles Between Heat-Tolerant and Heat-Sensitive Genotypes of Flowering Chinese Cabbage Under Heat Stress Using High-Throughput Sequencing

(2020) Waqas Ahmed et al.   Genes

Characterization of the Spatial and Temporal Expression of Two Soybean miRNAs Identifies SCL6 as a Novel Regulator of Soybean Nodulation

(2019) Md Shakhawat Hossain et al.   Frontiers in Plant Science

Non-coding RNAs: Functional roles in the regulation of stress response in Brassica crops

(2019) Waqas Ahmed et al.   GENOMICS

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species

(2018) Jinfang Zhang et al.   Scientific Reports

Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4

(2018) Li Qu et al.   Journal of Integrative Plant Biology

Monitoring residue levels and dietary risk assessment of pymetrozine for Chinese consumption of cauliflower

(2018) Guifei Jia et al.   BIOMEDICAL CHROMATOGRAPHY

Efficiency and precision of microRNA biogenesis modes in plants

(2018) Belén Moro et al.   NUCLEIC ACIDS RESEARCH

The ‘how’ and ‘where’ of plant microRNAs

(2017) Yu Yu et al.   NEW PHYTOLOGIST

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

(2017) Yu-Jian Kang et al.   NUCLEIC ACIDS RESEARCH

miR393-Mediated Auxin Signaling Regulation is Involved in Root Elongation Inhibition in Response to Toxic Aluminum Stress in Barley

(2017) Bin Bai et al.   PLANT AND CELL PHYSIOLOGY

miR397/Laccase Gene Mediated Network Improves Tolerance to Fenoxaprop-P-ethyl in Beckmannia syzigachne and Oryza sativa

(2017) Lang Pan et al.   Frontiers in Plant Science

Functional Roles of microRNAs in Agronomically Important Plants—Potential as Targets for Crop Improvement and Protection

(2017) Arnaud T. Djami-Tchatchou et al.   Frontiers in Plant Science

Ubiquitous miR159 repression of MYB33/65 in Arabidopsis rosettes is robust and is not perturbed by a wide range of stresses

(2016) Yanjiao Li et al.   BMC PLANT BIOLOGY

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Microarray and genetic analysis reveals that csa-miR159b plays a critical role in abscisic acid-mediated heat tolerance in grafted cucumber plants

(2016) Hao Li et al.   PLANT CELL AND ENVIRONMENT

Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice

(2016) Jian Huang et al.   Scientific Reports

A Genomic Analysis of Factors Driving lincRNA Diversification: Lessons from Plants

(2016) Andrew D. L. Nelson et al.   G3-Genes Genomes Genetics

Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures

(2015) Chandran Nithin et al.   BMC PLANT BIOLOGY

GREENC: a Wiki-based database of plant lncRNAs

(2015) Andreu Paytuví Gallart et al.   NUCLEIC ACIDS RESEARCH

microRNA biogenesis, degradation and activity in plants

(2014) Meng Xie et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

MiR397b regulates both lignin content and seed number in Arabidopsis via modulating a laccase involved in lignin biosynthesis

(2014) Cong-Ying Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

miR393 Is Required for Production of Proper Auxin Signalling Outputs

(2014) David Windels et al.   PLoS One

Functional interactions among microRNAs and long noncoding RNAs

(2014) Je-Hyun Yoon et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves

(2013) Anna Lukasik et al.   BMC GENOMICS

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

(2013) Liguo Wang et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Ectopic Expression of miR160 Results in Auxin Hypersensitivity, Cytokinin Hyposensitivity, and Inhibition of Symbiotic Nodule Development in Soybean

(2013) M. Turner et al.   PLANT PHYSIOLOGY

Genome-wide identification and characterization of miRNAs in the hypocotyl and cotyledon of cauliflower (Brassica oleracea L. var. botrytis) seedlings

(2013) Meijuan Geng et al.   PLANTA

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

(2013) S. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the classification of long non-coding RNAs

(2013) Lina Ma et al.   RNA Biology

Long noncoding RNAs in development and disease of the central nervous system

(2013) Shi-Yan Ng et al.   TRENDS IN GENETICS

Bioactive Compounds and Antioxidant Activity of Fresh and Processed White Cauliflower

(2013) Fouad A. Ahmed et al.   Biomed Research International

Expression of PaNAC01, a Picea abies CUP-SHAPED COTYLEDON orthologue, is regulated by polar auxin transport and associated with differentiation of the shoot apical meristem and formation of separated cotyledons

(2012) Emma Larsson et al.   ANNALS OF BOTANY

Identification and characterization of microRNAs and their target genes in Brassica oleracea

(2012) Jinyan Wang et al.   GENE

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Computational Identification and Functional Predictions of Long Noncoding RNA in Zea mays

(2012) Susan Boerner et al.   PLoS One

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

MicroRNAs and their diverse functions in plants

(2011) Guiling Sun   PLANT MOLECULAR BIOLOGY

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

(2010) Eric Bonnet et al.   BIOINFORMATICS

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of flowering time and floral patterning by miR172

(2010) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

SQUAMOSA Promoter-Binding Protein-Like Transcription Factors: Star Players for Plant Growth and Development

(2010) Xiaobo Chen et al.   Journal of Integrative Plant Biology

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer

(2010) Jiayi Wang et al.   NUCLEIC ACIDS RESEARCH

MicroRNA395 mediates regulation of sulfate accumulation and allocation in Arabidopsis thaliana

(2010) Gang Liang et al.   PLANT JOURNAL

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Interplay of miR164,CUP-SHAPED COTYLEDONgenes andLATERAL SUPPRESSORcontrols axillary meristem formation inArabidopsis thaliana

(2008) Smita Raman et al.   PLANT JOURNAL