Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition

The ever-expanding world of bacterial cyclic oligonucleotide second messengers

(2021) Soo hun Yoon et al.   CURRENT OPINION IN MICROBIOLOGY

Riboswitch regulation mechanisms: RNA, metabolites and regulatory proteins

(2020) Anne-Sophie Vézina Bédard et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch

(2020) Lin Huang et al.   RNA

Former orphan riboswitches reveal unexplored areas of bacterial metabolism, signaling, and gene control processes

(2020) Madeline E. Sherlock et al.   RNA

A bacterial riboswitch class senses xanthine and uric acid to regulate genes associated with purine oxidation

(2020) Diane Yu et al.   RNA

Excited-State Proton Transfer in 8-Azapurines I: A Kinetic Analysis of 8-Azaxanthine Fluorescence

(2020) Jacek Wierzchowski et al.   MOLECULES

Tandem riboswitches form a natural Boolean logic gate to control purine metabolism in bacteria

(2018) Madeline E Sherlock et al.   eLife

Structures of two aptamers with differing ligand specificity reveal ruggedness in the functional landscape of RNA

(2018) Andrew John Knappenberger et al.   eLife

Variant Bacterial Riboswitches Associated with Nucleotide Hydrolase Genes Sense Nucleoside Diphosphates

(2018) Madeline E. Sherlock et al.   BIOCHEMISTRY

ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands

(2018) Alla Peselis et al.   Nature Chemical Biology

Bioinformatic analysis of riboswitch structures uncovers variant classes with altered ligand specificity

(2017) Zasha Weinberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Riboswitch diversity and distribution

(2017) Phillip J. McCown et al.   RNA

A New View into the Regulation of Purine Metabolism: The Purinosome

(2017) Anthony M. Pedley et al.   TRENDS IN BIOCHEMICAL SCIENCES

Metal Ion-Mediated Nucleobase Recognition by the ZTP Riboswitch

(2015) Jeremiah J. Trausch et al.   CHEMISTRY & BIOLOGY

Multiple conformational states of riboswitches fine-tune gene regulation

(2015) Boris Fürtig et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

An Ancient Riboswitch Class in Bacteria Regulates Purine Biosynthesis and One-Carbon Metabolism

(2015) Peter B. Kim et al.   MOLECULAR CELL

Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains

(2015) Christopher P Jones et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Global RNA Fold and Molecular Recognition for a pfl Riboswitch Bound to ZMP, a Master Regulator of One-Carbon Metabolism

(2015) Aiming Ren et al.   STRUCTURE

Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains

(2015) Christopher P Jones et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Decade of Riboswitches

(2013) Alexander Serganov et al.   CELL

Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch

(2012) Aiming Ren et al.   NATURE

The Dynamic Nature of RNA as Key to Understanding Riboswitch Mechanisms

(2011) Andrea Haller et al.   ACCOUNTS OF CHEMICAL RESEARCH

A Powerful Approach for the Selection of 2-Aminopurine Substitution Sites to Investigate RNA Folding

(2011) Marie F. Soulière et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Riboswitches: Structures and Mechanisms

(2010) A. D. Garst et al.   Cold Spring Harbor Perspectives in Biology

Riboswitches and the RNA World

(2010) R. R. Breaker   Cold Spring Harbor Perspectives in Biology

Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch

(2009) Alexander Serganov et al.   NATURE

Adaptive Ligand Binding by the Purine Riboswitch in the Recognition of Guanine and Adenine Analogs

(2009) Sunny D. Gilbert et al.   STRUCTURE