U-net model for brain extraction: Trained on humans for transfer to non-human primates

Towards HCP-Style macaque connectomes: 24-Channel 3T multi-array coil, MRI sequences and preprocessing

(2020) Joonas A. Autio et al.   NEUROIMAGE

FastSurfer - A fast and accurate deep learning based neuroimaging pipeline

(2020) Leonie Henschel et al.   NEUROIMAGE

nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation

(2020) Fabian Isensee et al.   NATURE METHODS

A collaborative resource platform for non-human primate neuroimaging

(2020) Adam Messinger et al.   NEUROIMAGE

CIVET-Macaque: An automated pipeline for MRI-based cortical surface generation and cortical thickness in macaques

(2020) Claude Lepage et al.   NEUROIMAGE

3D U-Net for Skull Stripping in Brain MRI

(2019) Hyunho Hwang et al.   Applied Sciences-Basel

Pypreclin: An automatic pipeline for macaque functional MRI preprocessing

(2019) Jordy Tasserie et al.   NEUROIMAGE

atlasBREX: Automated template-derived brain extraction in animal MRI

(2019) Johannes Lohmeier et al.   Scientific Reports

Bayesian convolutional neural network based MRI brain extraction on nonhuman primates

(2018) Gengyan Zhao et al.   NEUROIMAGE

A population MRI brain template and analysis tools for the macaque

(2018) Jakob Seidlitz et al.   NEUROIMAGE

Functional Connectivity within the Primate Extended Amygdala Is Heritable and Associated with Early-Life Anxious Temperament

(2018) Andrew S. Fox et al.   JOURNAL OF NEUROSCIENCE

An Open Resource for Non-human Primate Imaging

(2018) Michael P. Milham et al.   NEURON

fMRIPrep: a robust preprocessing pipeline for functional MRI

(2018) Oscar Esteban et al.   NATURE METHODS

The real-time fMRI neurofeedback based stratification of Default Network Regulation Neuroimaging data repository

(2017) Amalia R. McDonald et al.   NEUROIMAGE

Deep MRI brain extraction: A 3D convolutional neural network for skull stripping

(2016) Jens Kleesiek et al.   NEUROIMAGE

DPABI: Data Processing & Analysis for (Resting-State) Brain Imaging

(2016) Chao-Gan Yan et al.   NEUROINFORMATICS

The preprocessed connectomes project repository of manually corrected skull-stripped T1-weighted anatomical MRI data

(2016) Benjamin Puccio et al.   GigaScience

Intergenerational neural mediators of early-life anxious temperament

(2015) Andrew S. Fox et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of the Central Sulcus Morphology in Primates

(2014) William D. Hopkins et al.   BRAIN BEHAVIOR AND EVOLUTION

The minimal preprocessing pipelines for the Human Connectome Project

(2013) Matthew F. Glasser et al.   NEUROIMAGE

Cortical sulci asymmetries in chimpanzees and macaques: A new look at an old idea

(2012) Stephanie L. Bogart et al.   NEUROIMAGE

FreeSurfer

(2012) Bruce Fischl   NEUROIMAGE

BEaST: Brain extraction based on nonlocal segmentation technique

(2011) Simon F. Eskildsen et al.   NEUROIMAGE

FSL

(2011) Mark Jenkinson et al.   NEUROIMAGE

N4ITK: Improved N3 Bias Correction

(2010) Nicholas J Tustison et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Amygdalar and hippocampal substrates of anxious temperament differ in their heritability

(2010) Jonathan A. Oler et al.   NATURE

Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain

(2007) B AVANTS et al.   MEDICAL IMAGE ANALYSIS

The impact of skull-stripping and radio-frequency bias correction on grey-matter segmentation for voxel-based morphometry

(2007) Julio Acosta-Cabronero et al.   NEUROIMAGE