Deficient H2A.Z deposition is associated with genesis of uterine leiomyoma

The CBX family of proteins in transcriptional repression and memory

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(2020) Wei Zhou et al.   NATURE GENETICS

Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv

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Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases

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The histone variant H2A.Z in gene regulation

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SATB2 and NGR1: potential upstream regulatory factors in uterine leiomyomas

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Integrated Epigenome, Exome, and Transcriptome Analyses Reveal Molecular Subtypes and Homeotic Transformation in Uterine Fibroids

(2019) Jitu Wilson George et al.   Cell Reports

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

NanoPack: visualizing and processing long-read sequencing data

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Recognition of histone acetylation by the GAS41 YEATS domain promotes H2A.Z deposition in non-small cell lung cancer

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Gas41 links histone acetylation to H2A.Z deposition and maintenance of embryonic stem cell identity

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Genetic predisposition to uterine leiomyoma is determined by loci for genitourinary development and genome stability

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The UCSC Genome Browser database: 2019 update

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COSMIC: the Catalogue Of Somatic Mutations In Cancer

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The chromatin accessibility landscape of primary human cancers

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Metformin alters H2A.Z dynamics and regulates androgen dependent prostate cancer progression

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Characterization of MED12, HMGA2, and FH alterations reveals molecular variability in uterine smooth muscle tumors

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An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

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Detecting DNA cytosine methylation using nanopore sequencing

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Differential methylation analysis for BS-seq data under general experimental design

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Dual role of Med12 in PRC1-dependent gene repression and ncRNA-mediated transcriptional activation

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HiChIP: efficient and sensitive analysis of protein-directed genome architecture

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Integrated data analysis reveals uterine leiomyoma subtypes with distinct driver pathways and biomarkers

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Rare variant phasing and haplotypic expression from RNA sequencing with phASER

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H2A.Z.1 Monoubiquitylation Antagonizes BRD2 to Maintain Poised Chromatin in ESCs

(2016) Lauren E. Surface et al.   Cell Reports

Medical Therapies for Uterine Fibroids – A Systematic Review and Network Meta-Analysis of Randomised Controlled Trials

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LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor

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Histone Variant H2A.Z.2 Mediates Proliferation and Drug Sensitivity of Malignant Melanoma

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Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

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HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

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Genomics of uterine leiomyomas: insights from high-throughput sequencing

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MED12 and HMGA2 mutations: two independent genetic events in uterine leiomyoma and leiomyosarcoma

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Causal analysis approaches in Ingenuity Pathway Analysis

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Polycomb Cbx family members mediate the balance between haematopoietic stem cell self-renewal and differentiation

(2013) Karin Klauke et al.   NATURE CELL BIOLOGY

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Characterization of Uterine Leiomyomas by Whole-Genome Sequencing

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Activation of p21 by HDAC Inhibitors Requires Acetylation of H2A.Z

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Matrix eQTL: ultra fast eQTL analysis via large matrix operations

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Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

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ChromHMM: automating chromatin-state discovery and characterization

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Whole Exome Sequencing in a Random Sample of North American Women with Leiomyomas Identifies MED12 Mutations in Majority of Uterine Leiomyomas

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Antigen Retrieval Causes Protein Unfolding

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Penalized classification using Fisher's linear discriminant

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ChIP-Seq: technical considerations for obtaining high-quality data

(2011) Benjamin L Kidder et al.   NATURE IMMUNOLOGY

MED12, the Mediator Complex Subunit 12 Gene, Is Mutated at High Frequency in Uterine Leiomyomas

(2011) N. Makinen et al.   SCIENCE

ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking

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The chromatin remodeling factor SRCAP modulates expression of prostate specific antigen and cellular proliferation in prostate cancer cells

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Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays

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Incidence, aetiology and epidemiology of uterine fibroids

(2008) Stanley Okolo   BEST PRACTICE & RESEARCH CLINICAL OBSTETRICS & GYNAECOLOGY

Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression

(2008) Sujun Hua et al.   Molecular Systems Biology

Genomewide Analysis of PRC1 and PRC2 Occupancy Identifies Two Classes of Bivalent Domains

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