A high‐quality genome assembly of Jasminum sambac provides insight into floral trait formation and Oleaceae genome evolution

Genome-Wide Identification and Expression Profile of TPS Gene Family in Dendrobium officinale and the Role of DoTPS10 in Linalool Biosynthesis

(2020) Zhenming Yu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour

(2019) Liyi Zhang et al.   Nature Communications

Genome assembly of a tropical maize inbred line provides insights into structural variation and crop improvement

(2019) Ning Yang et al.   NATURE GENETICS

Evolutionary processes from the perspective of flowering time diversity

(2019) Allison Gaudinier et al.   NEW PHYTOLOGIST

NextPolish: a fast and efficient genome polishing tool for long-read assembly

(2019) Jiang Hu et al.   BIOINFORMATICS

Functional analysis of GhCHS, GhANR and GhLAR in colored fiber formation of Gossypium hirsutum L

(2019) Jianfang Gao et al.   BMC PLANT BIOLOGY

Volatiles distribution in jasmine flowers taxa grown in Egypt and its commercial products as analyzed via solid-phase microextraction (SPME) coupled to chemometrics

(2019) Marwa Y. Issa et al.   INDUSTRIAL CROPS AND PRODUCTS

Phylogenomics of the olive tree (Olea europaea) reveals the relative contribution of ancient allo- and autopolyploidization events

(2018) Irene Julca et al.   BMC BIOLOGY

The chromosome-level quality genome provides insights into the evolution of the biosynthesis genes for aroma compounds of Osmanthus fragrans

(2018) Xiulian Yang et al.   Horticulture Research

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

(2017) Derek M Bickhart et al.   NATURE GENETICS

Enzymatic production and emission of floral scent volatiles in Jasminum sambac

(2017) Paramita Bera et al.   PLANT SCIENCE

Evolution and diversity of floral scent chemistry in the euglossine bee-pollinated orchid genusGongora

(2016) Molly C. Hetherington-Rauth et al.   ANNALS OF BOTANY

Genome sequence and genetic diversity of European ash trees

(2016) Elizabeth S. A. Sollars et al.   NATURE

A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution

(2016) Massimo Iorizzo et al.   NATURE GENETICS

Long-read sequence assembly of the gorilla genome

(2016) D. Gordon et al.   SCIENCE

Genome sequence of the olive tree, Olea europaea

(2016) Fernando Cruz et al.   GigaScience

Draft genome of the living fossil Ginkgo biloba

(2016) Rui Guan et al.   GigaScience

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Polyploidy and genome evolution in plants

(2015) Pamela S Soltis et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Minimum Information about a Biosynthetic Gene cluster

(2015) Marnix H Medema et al.   Nature Chemical Biology

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Recent advances on the development and regulation of flower color in ornamental plants

(2015) Daqiu Zhao et al.   Frontiers in Plant Science

Molecular characterization of genes encoding leucoanthocyanidin reductase involved in proanthocyanidin biosynthesis in apple

(2015) Liao Liao et al.   Frontiers in Plant Science

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

(2014) Y. Xie et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Adaptation in flower form: a comparative evodevo approach

(2014) Chelsea D. Specht et al.   NEW PHYTOLOGIST

Secondary Cell Walls: Biosynthesis, Patterned Deposition and Transcriptional Regulation

(2014) Ruiqin Zhong et al.   PLANT AND CELL PHYSIOLOGY

Elevated Levels of MYB30 in the Phloem Accelerate Flowering in Arabidopsis through the Regulation of FLOWERING LOCUS T

(2014) Liangyu Liu et al.   PLoS One

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations

(2013) M. S. Campbell et al.   PLANT PHYSIOLOGY

Effects of clonality on the genetic variability of rare, insular species: the case ofRuta microcarpafrom the Canary Islands

(2013) M. Meloni et al.   Ecology and Evolution

The genome of the pear (Pyrus bretschneideri Rehd.)

(2012) J. Wu et al.   GENOME RESEARCH

Hi–C: A comprehensive technique to capture the conformation of genomes

(2012) Jon-Matthew Belton et al.   METHODS

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Polyploidy in fungi: evolution after whole-genome duplication

(2012) W. Albertin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phenotypic plasticity and adaptive evolution contribute to advancing flowering phenology in response to climate change

(2012) J. T. Anderson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mechanistic, Mutational, and Structural Evaluation of aTaxusPhenylalanine Aminomutase

(2011) Lei Feng et al.   BIOCHEMISTRY

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Emerging Importance of Type I MADS Box Transcription Factors for Plant Reproduction

(2011) S. Masiero et al.   PLANT CELL

The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom

(2011) Feng Chen et al.   PLANT JOURNAL

Tandem duplication of the FLC locus and the origin of a new gene in Arabidopsis related species and their functional implications in allopolyploids

(2010) Gyoungju Nah et al.   NEW PHYTOLOGIST

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A Collection of Ds Insertional Mutants Associated With Defects in Male Gametophyte Development and Function in Arabidopsis thaliana

(2009) L. C. Boavida et al.   GENETICS

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

SOC1 translocated to the nucleus by interaction with AGL24 directly regulatesLEAFY

(2008) Jungeun Lee et al.   PLANT JOURNAL

Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids

(2008) Yoshikazu Tanaka et al.   PLANT JOURNAL