Ongoing production of low‐fitness hybrids limits range overlap between divergent cryptic species

Assortative mating in hybrid zones is remarkably ineffective in promoting speciation

(2020) Darren Irwin   AMERICAN NATURALIST

Genomic evidence of neo-sex chromosomes in the eastern yellow robin

(2019) Han Ming Gan et al.   GigaScience

Sex chromosomes and speciation in birds and other ZW systems

(2018) Darren E. Irwin   MOLECULAR ECOLOGY

Concordant divergence of mitogenomes and a mitonuclear gene cluster in bird lineages inhabiting different climates

(2018) Hernán E. Morales et al.   Nature Ecology & Evolution

A comparison of genomic islands of differentiation across three young avian species pairs

(2018) Darren E. Irwin et al.   MOLECULAR ECOLOGY

Song evolution, speciation, and vocal learning in passerine birds

(2017) Nicholas A. Mason et al.   EVOLUTION

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

(2017) M. Ravinet et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Assortative mating and persistent reproductive isolation in hybrids

(2017) Molly Schumer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genetics of Seasonal Migration and Plumage Color

(2016) Kira E. Delmore et al.   CURRENT BIOLOGY

Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers

(2016) David P.L. Toews et al.   CURRENT BIOLOGY

Genetic Basis for Red Coloration in Birds

(2016) Ricardo J. Lopes et al.   CURRENT BIOLOGY

The sequence of sequencers: The history of sequencing DNA

(2016) James M. Heather et al.   GENOMICS

Beyond clines: lineages and haplotype blocks in hybrid zones

(2016) Alisa Sedghifar et al.   MOLECULAR ECOLOGY

Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in a ring species

(2016) Darren E. Irwin et al.   MOLECULAR ECOLOGY

A genomic perspective on hybridization and speciation

(2016) Bret A. Payseur et al.   MOLECULAR ECOLOGY

The programstructuredoes not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem

(2016) Sebastien J. Puechmaille   Molecular Ecology Resources

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Z chromosome divergence, polymorphism and relative effective population size in a genus of lekking birds

(2015) S J Oyler-McCance et al.   HEREDITY

The importance (or lack thereof) of niche divergence to the maintenance of a northern species complex: the case of the long-toed salamander (Ambystoma macrodactylumBaird)

(2015) J. A. Lee-Yaw et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation

(2015) Kira E. Delmore et al.   MOLECULAR ECOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

GENOMIC AND MORPHOLOGICAL ANALYSIS OF A SEMIPERMEABLE AVIAN HYBRID ZONE SUGGESTS ASYMMETRICAL INTROGRESSION OF A SEXUAL SIGNAL

(2014) Daniel T. Baldassarre et al.   EVOLUTION

A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution

(2014) Takeshi Kawakami et al.   MOLECULAR ECOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Genomic divergence in a ring species complex

(2014) Miguel Alcaide et al.   NATURE

Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination

(2013) Carina F Mugal et al.   BMC GENOMICS

THE GENOMIC SIGNATURE OF SEXUAL SELECTION IN THE GENETIC DIVERSITY OF THE SEX CHROMOSOMES AND AUTOSOMES

(2012) Ammon Corl et al.   EVOLUTION

The genomic landscape of species divergence in Ficedula flycatchers

(2012) Hans Ellegren et al.   NATURE

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids

(2011) Bridgett M. vonHoldt et al.   GENOME RESEARCH

Evidence of a neo-sex chromosome in birds

(2011) I Pala et al.   HEREDITY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Fifty-First Supplement to the American Ornithologists' UnionCheck-List of North American Birds

(2010) R. Terry Chesser et al.   AUK

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Widespread Translocation from Autosomes to Sex Chromosomes Preserves Genetic Variability in an Endangered Lark

(2010) M. de L. Brooke et al.   JOURNAL OF MOLECULAR EVOLUTION

The roles of time and ecology in the continental radiation of the Old World leaf warblers (Phylloscopus and Seicercus)

(2010) T. D. Price   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken

(2009) Hendrik-Jan Megens et al.   BMC GENETICS

INCIPIENT SPECIATION DESPITE LITTLE ASSORTATIVE MATING: THE YELLOW-RUMPED WARBLER HYBRID ZONE

(2009) Alan Brelsford et al.   EVOLUTION

FEMALE HETEROGAMETY AND SPECIATION: REDUCED INTROGRESSION OF THE Z CHROMOSOME BETWEEN TWO SPECIES OF NIGHTINGALES

(2009) Radka Storchová et al.   EVOLUTION

Evolutionarily stable range limits set by interspecific competition

(2009) T. D Price et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Speciation through evolution of sex-linked genes

(2008) A Qvarnström et al.   HEREDITY

Cryptic speciation in a Holarctic passerine revealed by genetic and bioacoustic analyses

(2008) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Speciation with gene flow could be common

(2008) PATRIK NOSIL   MOLECULAR ECOLOGY

Calibrating the avian molecular clock

(2008) J. T. WEIR et al.   MOLECULAR ECOLOGY

Reproductive Interference Between Animal Species

(2008) Julia Gröning et al.   QUARTERLY REVIEW OF BIOLOGY

Sex chromosomes and speciation in Drosophila

(2008) Daven C. Presgraves   TRENDS IN GENETICS