Two Genomic Loci Control Three Eye Colors in the Domestic Pigeon (Columba livia)

Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates

(2021) Pedro Andrade et al.   PLoS Genetics

A 14-bp insertion in endothelin receptor B-like (EDNRB2) is associated with white plumage in Chinese geese

(2020) Yang Xi et al.   BMC GENOMICS

Genome‐wide association studies for iris pigmentation and heterochromia patterns in Large White pigs

(2020) G. Moscatelli et al.   ANIMAL GENETICS

A copy number variant is associated with a spectrum of pigmentation patterns in the rock pigeon (Columba livia)

(2020) Rebecca Bruders et al.   PLoS Genetics

Avian Pigment Pattern Formation: Developmental Control of Macro- (Across the Body) and Micro- (Within a Feather) Level of Pigment Patterns

(2020) Masafumi Inaba et al.   Frontiers in Cell and Developmental Biology

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Improved Genome Assembly and Annotation for the Rock Pigeon ( Columba livia )

(2018) Carson Holt et al.   G3-Genes Genomes Genetics

Teleost Fish-Specific Preferential Retention of Pigmentation Gene-Containing Families After Whole Genome Duplications in Vertebrates

(2018) Thibault Lorin et al.   G3-Genes Genomes Genetics

Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon

(2018) Anna I Vickrey et al.   eLife

The evolution of iris colour in relation to nocturnality in owls

(2018) A. Passarotto et al.   JOURNAL OF AVIAN BIOLOGY

Intraspecific eye color variability in birds and mammals: a recent evolutionary event exclusive to humans and domestic animals

(2017) Juan J. Negro et al.   Frontiers in Zoology

EDNRB mutations cause Waardenburg syndrome type II in the heterozygous state

(2017) Sarah Issa et al.   HUMAN MUTATION

Embryonic expression of endothelins and their receptors in lamprey and frog reveals stem vertebrate origins of complex Endothelin signaling

(2016) Tyler Square et al.   Scientific Reports

Molecular shifts in limb identity underlie development of feathered feet in two domestic avian species

(2016) Eric T Domyan et al.   eLife

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels

(2015) Yongwook Choi et al.   BIOINFORMATICS

Iris pigmentation as a quantitative trait: variation in populations of European, East Asian and South Asian ancestry and association with candidate gene polymorphisms

(2015) Melissa Edwards et al.   Pigment Cell & Melanoma Research

Endothelin Receptor B2 (EDNRB2) Gene Is Associated with Spot Plumage Pattern in Domestic Ducks (Anas platyrhynchos)

(2015) Ling Li et al.   PLoS One

Salient eyes deter conspecific nest intruders in wild jackdaws (Corvus monedula)

(2014) G. L. Davidson et al.   Biology Letters

Epistatic and Combinatorial Effects of Pigmentary Gene Mutations in the Domestic Pigeon

(2014) Eric T. Domyan et al.   CURRENT BIOLOGY

Origins of adult pigmentation: diversity in pigment stem cell lineages and implications for pattern evolution

(2014) David M. Parichy et al.   Pigment Cell & Melanoma Research

Endothelin Receptor B2 (EDNRB2) Is Responsible for the Tyrosinase-Independent Recessive White (mow) and Mottled (mo) Plumage Phenotypes in the Chicken

(2014) Keiji Kinoshita et al.   PLoS One

Leucophores are similar to xanthophores in their specification and differentiation processes in medaka

(2014) T. Kimura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon

(2013) M. D. Shapiro et al.   SCIENCE

Adaptive Evolution of Multiple Traits Through Multiple Mutations at a Single Gene

(2013) C. R. Linnen et al.   SCIENCE

Genetics of Pigmentation in Dogs and Cats

(2013) Christopher B. Kaelin et al.   Annual Review of Animal Biosciences

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Predicting the Functional Effect of Amino Acid Substitutions and Indels

(2012) Yongwook Choi et al.   PLoS One

Novel mutations of endothelin-B receptor gene in Pakistani patients with Waardenburg syndrome

(2011) Raheela Jabeen et al.   MOLECULAR BIOLOGY REPORTS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Review and update of mutations causing Waardenburg syndrome

(2010) Véronique Pingault et al.   HUMAN MUTATION

Structure-Function Analysis of VPS9-Ankyrin-repeat Protein (Varp) in the Trafficking of Tyrosinase-related Protein 1 in Melanocytes

(2010) Kanako Tamura et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Vertebrate pigmentation: from underlying genes to adaptive function

(2010) Joanna K. Hubbard et al.   TRENDS IN GENETICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Pigmentation Pathway Evolution after Whole-Genome Duplication in Fish

(2009) Ingo Braasch et al.   Genome Biology and Evolution

The Endothelin System: Evolution of Vertebrate-Specific Ligand-Receptor Interactions by Three Rounds of Genome Duplication

(2009) I. Braasch et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Genetics of human iris colour and patterns

(2009) Richard A. Sturm et al.   Pigment Cell & Melanoma Research

Directing pathfinding along the dorsolateral path - the role of EDNRB2 and EphB2 in overcoming inhibition

(2008) M. L. Harris et al.   DEVELOPMENT

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

Stripes and belly-spots—A review of pigment cell morphogenesis in vertebrates

(2008) Robert N. Kelsh et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Iris development in vertebrates; genetic and molecular considerations

(2007) Noa Davis-Silberman et al.   BRAIN RESEARCH