Molecular shifts in limb identity underlie development of feathered feet in two domestic avian species

Qualitative skeletal correlates of wing shape in extant birds (Aves: Neoaves)

(2015) Tobin L Hieronymus   BMC EVOLUTIONARY BIOLOGY

Convergent Evolution of Head Crests in Two Domesticated Columbids Is Associated with Different Missense Mutations inEphB2

(2015) Anna I. Vickrey et al.   MOLECULAR BIOLOGY AND EVOLUTION

A new time tree reveals Earth historys imprint on the evolution of modern birds

(2015) S. Claramunt et al.   Science Advances

Epistatic and Combinatorial Effects of Pigmentary Gene Mutations in the Domestic Pigeon

(2014) Eric T. Domyan et al.   CURRENT BIOLOGY

New specimen of Archaeopteryx provides insights into the evolution of pennaceous feathers

(2014) Christian Foth et al.   NATURE

A Jurassic ornithischian dinosaur from Siberia with both feathers and scales

(2014) P. Godefroit et al.   SCIENCE

Domestic pigeons

(2013) Michael D. Shapiro et al.   CURRENT BIOLOGY

Hind Wings in Basal Birds and the Evolution of Leg Feathers

(2013) X. Zheng et al.   SCIENCE

Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon

(2013) M. D. Shapiro et al.   SCIENCE

Genetic Architecture of Parallel Pelvic Reduction in Ninespine Sticklebacks

(2013) Takahito Shikano et al.   G3-Genes Genomes Genetics

Homeotic Arm-to-Leg Transformation Associated with Genomic Rearrangements at the PITX1 Locus

(2012) Malte Spielmann et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

A Review of Dromaeosaurid Systematics and Paravian Phylogeny

(2012) Alan H. Turner et al.   BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY

Pitx1 broadly associates with limb enhancers and is enriched on hindlimb cis-regulatory elements

(2012) Carlos R. Infante et al.   DEVELOPMENTAL BIOLOGY

Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb

(2012) Justin Cotney et al.   GENOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

Regulation of limb bud initiation and limb-type morphology

(2011) Veronique Duboc et al.   DEVELOPMENTAL DYNAMICS

Pitx1 haploinsufficiency causes clubfoot in humans and a clubfoot-like phenotype in mice

(2011) D. M. Alvarado et al.   HUMAN MOLECULAR GENETICS

In search of the Golden Fleece: unraveling principles of morphogenesis by studying the integrative biology of skin appendages

(2011) Michael W. Hughes et al.   Integrative Biology

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

A High Throughput in situ Hybridization Method to Characterize mRNA Expression Patterns in the Fetal Mouse Lower Urogenital Tract

(2011) Lisa L. Abler et al.   Jove-Journal of Visualized Experiments

Tbx4 and Tbx5 Acting in Connective Tissue Are Required for Limb Muscle and Tendon Patterning

(2010) Peleg Hasson et al.   DEVELOPMENTAL CELL

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

TYPES OF LEGFEATHERING IN PIGEONS

(2010) H. WEXELSEN   HEREDITAS

Genomic Regions Associated with Dermal Hyperpigmentation, Polydactyly and Other Morphological Traits in the Silkie Chicken

(2010) B. Dorshorst et al.   JOURNAL OF HEREDITY

Histone H3K27ac separates active from poised enhancers and predicts developmental state

(2010) M. P. Creyghton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new scenario for the evolutionary origin of hair, feather, and avian scales

(2009) Danielle Dhouailly   JOURNAL OF ANATOMY

A pre-Archaeopteryx troodontid theropod from China with long feathers on the metatarsus

(2009) Dongyu Hu et al.   NATURE

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

Asymmetric Lower-Limb Malformations in Individuals with Homeobox PITX1 Gene Mutation

(2008) Christina A. Gurnett et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A Gain-of-Function TBX5 Mutation Is Associated With Atypical Holt–Oram Syndrome and Paroxysmal Atrial Fibrillation

(2008) Alex V. Postma et al.   CIRCULATION RESEARCH

Conservation of linkage and evolution of developmental function within the Tbx2/3/4/5 subfamily of T-box genes: implications for the origin of vertebrate limbs

(2008) Amy C. Horton et al.   DEVELOPMENT GENES AND EVOLUTION

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY