Monitoring Infection and Antibiotic Treatment in the Skin Microbiota of Farmed European Seabass (Dicentrarchus Labrax) Fingerlings

The Alteration of Intestinal Microbiota Profile and Immune Response in Epinephelus coioides during Pathogen Infection

(2021) Joan Tang Xiao Joe et al.   Life-Basel

Insights into the microbiome of farmed Asian sea bass (Lates calcarifer) with symptoms of tenacibaculosis and description of Tenacibaculum singaporense sp. nov.

(2020) Sou Miyake et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Gut–Liver Immune Response and Gut Microbiota Profiling Reveal the Pathogenic Mechanisms of Vibrio harveyi in Pearl Gentian Grouper (Epinephelus lanceolatus♂ × E. fuscoguttatus♀)

(2020) Yiqin Deng et al.   Frontiers in Immunology

Biochemical but not compositional recovery of skin mucosal microbiome communities after disruption

(2019) Chelcy E. Brumlow et al.   Infection and Drug Resistance

Long-term effects of oxytetracycline exposure in zebrafish: A multi-level perspective

(2019) Ana Rita Almeida et al.   CHEMOSPHERE

Variations of the intestinal gut microbiota of farmed rainbow trout, Oncorhynchus mykiss (Walbaum), depending on the infection status of the fish

(2019) A.N. Parshukov et al.   JOURNAL OF APPLIED MICROBIOLOGY

Diversity and abundance of antibiotic resistance of bacteria during the seedling period in marine fish cage-culture areas of Hainan, China

(2019) Jinjun Wu et al.   MARINE POLLUTION BULLETIN

Vibriosis in cultured marine fishes: a review

(2019) Nurliyana Mohamad et al.   AQUACULTURE

The impact of antibiotic exposure in water and zebrafish gut microbiomes: A 16S rRNA gene-based metagenomic analysis

(2019) Ana Rita Almeida et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Effects of disease, antibiotic treatment and recovery trajectory on the microbiome of farmed seabass (Dicentrarchus labrax)

(2019) Daniela Rosado et al.   Scientific Reports

Altered gut microbiota associated with intestinal disease in grass carp (Ctenopharyngodon idellus)

(2018) Ngoc Tuan Tran et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

The Inner Workings of the Outer Surface: Skin and Gill Microbiota as Indicators of Changing Gut Health in Yellowtail Kingfish

(2018) Thibault P. R. A. Legrand et al.   Frontiers in Microbiology

The Gut–Brain Axis and the Microbiome: Mechanisms and Clinical Implications

(2018) Vadim Osadchiy et al.   Clinical Gastroenterology and Hepatology

New approach for understanding genome variations in KEGG

(2018) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Exposure to Antibiotics Affects Saponin Immersion-Induced Immune Stimulation and Shift in Microbial Composition in Zebrafish Larvae

(2018) Adrià López Nadal et al.   Frontiers in Microbiology

The Change of Teleost Skin Commensal Microbiota Is Associated With Skin Mucosal Transcriptomic Responses During Parasitic Infection by Ichthyophthirius multifillis

(2018) Xiaoting Zhang et al.   Frontiers in Immunology

Transgenerational toxicity of flumequine over four generations of Daphnia magna

(2018) Marco De Liguoro et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Under Pressure: Interactions between Commensal Microbiota and the Teleost Immune System

(2017) Cecelia Kelly et al.   Frontiers in Immunology

Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic

(2017) Jeanette Carlson et al.   Infection and Drug Resistance

Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish

(2017) Anti Vasemägi et al.   mSphere

Salmonid alphavirus infection causes skin dysbiosis in Atlantic salmon (Salmo salar L.) post-smolts

(2017) Kristin M. Reid et al.   PLoS One

Parasitism perturbs the mucosal microbiome of Atlantic Salmon

(2017) M. S. Llewellyn et al.   Scientific Reports

Bacteria associated with lionfish (Pterois volitans/miles complex) exhibit antibacterial activity against known fish pathogens

(2016) JL Stevens et al.   MARINE ECOLOGY PROGRESS SERIES

Pathogenesis of Photobacterium damselae subspecies infections in sea bass and sea bream

(2016) H.M. Essam et al.   MICROBIAL PATHOGENESIS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Bacteria associated with lionfish (Pterois volitans/miles complex) exhibit antibacterial activity against known fish pathogens

(2016) JL Stevens et al.   MARINE ECOLOGY PROGRESS SERIES

The vocabulary of microbiome research: a proposal

(2015) Julian R. Marchesi et al.   Microbiome

Characterisation of the Physical Composition and Microbial Community Structure of Biofilms within a Model Full-Scale Drinking Water Distribution System

(2015) Katherine E. Fish et al.   PLoS One

Defining dysbiosis and its influence on host immunity and disease

(2014) Charisse Petersen et al.   CELLULAR MICROBIOLOGY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Microbiome: The surface brigade

(2012) Bijal Trivedi   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY