Integrated transcriptome and metabolome analysis reveals molecular responses of the clams to acute hypoxia

Effect of probiotics on the intestinal microbiota of hemodialysis patients: a randomized trial

(2020) Sixiu Liu et al.   EUROPEAN JOURNAL OF NUTRITION

Transcriptome analysis reveals differential immune related genes expression in Ruditapes philippinarum under hypoxia stress: potential HIF and NF-κB crosstalk in immune responses in clam

(2020) Hongtao Nie et al.   BMC GENOMICS

Altered gut microbial profile is associated with abnormal metabolism activity of Autism Spectrum Disorder

(2020) Zhou Dan et al.   Gut Microbes

What is the role of peptide fragments of collagen I and IV in health and disease?

(2019) Andrew Kisling et al.   LIFE SCIENCES

Effects of ectoine on behavioral, physiological and biochemical parameters of Daphnia magna exposed to dimethyl sulfoxide

(2019) Adam Bownik   SCIENCE OF THE TOTAL ENVIRONMENT

Genome-wide identification and characterization of the AMPK genes and their distinct expression patterns in response to air exposure in the Manila clam (Ruditapes philippinarum)

(2019) Jingtian Wang et al.   Genes & Genomics

Differences between fast and slow muscles in scallops revealed through proteomics and transcriptomics

(2018) Xiujun Sun et al.   BMC GENOMICS

Metabolomic analysis of heat-hardening in adult green-lipped mussel ( Perna canaliculus ): A key role for succinic acid and the GABA ergic synapse pathway

(2018) B.J. Dunphy et al.   JOURNAL OF THERMAL BIOLOGY

Uncovering the metabolic response of abalone (Haliotis midae) to environmental hypoxia through metabolomics

(2018) Leonie Venter et al.   Metabolomics

Invertebrate Trehalose-6-Phosphate Synthase Gene: Genetic Architecture, Biochemistry, Physiological Function, and Potential Applications

(2018) Bin Tang et al.   Frontiers in Physiology

The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum)

(2017) Seyoung Mun et al.   Genome Biology and Evolution

Effects of hypoxia in the gills of the Manila clam Ruditapes philippinarum using NMR-based metabolomics

(2017) Ying Zhang et al.   MARINE POLLUTION BULLETIN

1H NMR-based metabolomics approach reveals metabolic alterations in response to dietary imbalances in Megalobrama amblycephala

(2017) Panita Prathomya et al.   Metabolomics

Physiological performance of the intertidal Manila clam (Ruditapes philippinarum) to long-term daily rhythms of air exposure

(2017) Xuwang Yin et al.   Scientific Reports

Evaluation of O2PLS in Omics data integration

(2016) Said el Bouhaddani et al.   BMC BIOINFORMATICS

l-Hydroxyproline and d-Proline Catabolism in Sinorhizobium meliloti

(2016) Siyun Chen et al.   JOURNAL OF BACTERIOLOGY

NMR-based metabolomic analysis of Haliotis diversicolor exposed to thermal and hypoxic stresses

(2016) Jie Lu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Identifying Thermally-Stressed Adult Green-Lipped Mussels(Perna canaliculusGmelin, 1791)via Metabolomic Profiling*

(2015) Brendon J. Dunphy et al.   AMERICAN MALACOLOGICAL BULLETIN

Neuronal responses to stress and injury inC. elegans

(2015) Kyung Won Kim et al.   FEBS LETTERS

A Novel Collagen Matricryptin Reduces Left Ventricular Dilation Post-Myocardial Infarction by Promoting Scar Formation and Angiogenesis

(2015) Merry L. Lindsey et al.   JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Identification of candidate biomarkers for quality assessment of hatchery-reared mussel larvae via GC/MS-based metabolomics

(2015) T Young et al.   NEW ZEALAND JOURNAL OF MARINE AND FRESHWATER RESEARCH

Effects of environmental and farm stress on abalone physiology: perspectives for abalone aquaculture in the face of global climate change

(2015) Andrea J. Morash et al.   Reviews in Aquaculture

In-depth proteomic analysis of shell matrix proteins of Pinctada fucata

(2015) Chuang Liu et al.   Scientific Reports

Autophagy protects against hypoxic injury inC. elegans

(2014) Victor Samokhvalov et al.   Autophagy

Protective effects of ectoine on heat-stressed Daphnia magna

(2014) Bownik Adam et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Functional screening of a cDNA library from the desiccation-tolerant plant Selaginella lepidophylla in yeast mutants identifies trehalose biosynthesis genes of plant and microbial origin

(2014) Suzana Pampurova et al.   JOURNAL OF PLANT RESEARCH

Oxidative stress in abalone: The role of temperature, oxygen and l-proline supplementation

(2013) Dalene Vosloo et al.   AQUACULTURE

Differential metabolic responses of clam Ruditapes philippinarum to Vibrio anguillarum and Vibrio splendidus challenges

(2013) Xiaoli Liu et al.   FISH & SHELLFISH IMMUNOLOGY

Reflections on univariate and multivariate analysis of metabolomics data

(2013) Edoardo Saccenti et al.   Metabolomics

Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database

(2013) Zheng-Jiang Zhu et al.   Nature Protocols

Distinct roles for ROCK1 and ROCK2 in the regulation of cell detachment

(2013) Jianjian Shi et al.   Cell Death & Disease

Dietary requirements of “nutritionally non-essential amino acids” by animals and humans

(2012) Guoyao Wu et al.   AMINO ACIDS

The after-effects of hypoxia exposure on the clam Ruditapes philippinarum in Omaehama beach, Japan

(2012) Yasunori Kozuki et al.   ESTUARINE COASTAL AND SHELF SCIENCE

The vesicular glutamate transporter VGLUT3 contributes to protection against neonatal hypoxic stress

(2012) Stéphanie Miot et al.   JOURNAL OF PHYSIOLOGY-LONDON

Energy homeostasis as an integrative tool for assessing limits of environmental stress tolerance in aquatic invertebrates

(2012) Inna M. Sokolova et al.   MARINE ENVIRONMENTAL RESEARCH

Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes

(2012) M. Muller et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Metabolomics: the apogee of the omics trilogy

(2012) Gary J. Patti et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

AMPK: a nutrient and energy sensor that maintains energy homeostasis

(2012) D. Grahame Hardie et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Neuronal Responses to Physiological Stress

(2012) Konstantinos Kagias et al.   Frontiers in Genetics

High-resolution analysis of metabolic cycles in the intertidal mussel Mytilus californianus

(2011) Kwasi M. Connor et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Hypoxia Triggers AMPK Activation through Reactive Oxygen Species-Mediated Activation of Calcium Release-Activated Calcium Channels

(2011) P. T. Mungai et al.   MOLECULAR AND CELLULAR BIOLOGY

Neurexins and Neuroligins: Recent Insights from Invertebrates

(2011) David Knight et al.   MOLECULAR NEUROBIOLOGY

AMP-activated protein kinase (AMPK) activity is not required for neuronal development but regulates axogenesis during metabolic stress

(2011) T. Williams et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phosphorylation of the voltage-gated potassium channel Kv2.1 by AMP-activated protein kinase regulates membrane excitability

(2011) N. Ikematsu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate-Forced Variability of Ocean Hypoxia

(2011) Curtis Deutsch et al.   SCIENCE

Trehalose-6-Phosphate: Connecting Plant Metabolism and Development

(2011) Jathish Ponnu et al.   Frontiers in Plant Science

Proline Metabolism and Microenvironmental Stress

(2010) James M. Phang et al.   Annual Review of Nutrition

Metabotropic Glutamate Receptors: Physiology, Pharmacology, and Disease

(2010) Colleen M. Niswender et al.   Annual Review of Pharmacology and Toxicology

Metabolic power budgeting and adaptive strategies in zoology: examples from scallops and fishThe present review is one of a series of occasional review articles that have been invited by the Editors and will feature the broad range of disciplines and expertise represented in our Editorial Advisory Board.

(2010) Helga Guderley et al.   CANADIAN JOURNAL OF ZOOLOGY

Rho-kinase/ROCK: A key regulator of the cytoskeleton and cell polarity

(2010) Mutsuki Amano et al.   Cytoskeleton

Anaerobic metabolic patterns related to stress responses in hypoxia exposed mussels Mytilus galloprovincialis

(2010) Andreas Anestis et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Metabolic Regulation of Neuronal Plasticity by the Energy Sensor AMPK

(2010) Wyatt B. Potter et al.   PLoS One

Regulation of sphingosine kinase and sphingolipid signaling

(2010) Stuart M. Pitson   TRENDS IN BIOCHEMICAL SCIENCES

The Collagen Family

(2010) S. Ricard-Blum   Cold Spring Harbor Perspectives in Biology

Isolation and characterization of the trehalose-6-phosphate synthase gene fromLocusta migratoria manilensis

(2009) Shu-Yan Cui et al.   Insect Science

The regulation of AMPK signaling in a natural state of profound metabolic rate depression

(2009) Christopher J. Ramnanan et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

ECOLOGY: Controlling Eutrophication: Nitrogen and Phosphorus

(2009) D. J. Conley et al.   SCIENCE

Glutamatergic networks in theCiona intestinalis larva

(2008) Takeo Horie et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Effect of prolonged hypoxia on food consumption, respiration, growth and reproduction in marine scavenging gastropod Nassarius festivus

(2008) S.G. Cheung et al.   MARINE POLLUTION BULLETIN

Assessment of PLSDA cross validation

(2008) Johan A. Westerhuis et al.   Metabolomics

Thresholds of hypoxia for marine biodiversity

(2008) R. Vaquer-Sunyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emergence of Anoxia in the California Current Large Marine Ecosystem

(2008) F. Chan et al.   SCIENCE

Expanding Oxygen-Minimum Zones in the Tropical Oceans

(2008) L. Stramma et al.   SCIENCE

ECOLOGY: Physiology and Climate Change

(2008) H. O. Portner et al.   SCIENCE