Predicting phosphorylation sites using machine learning by integrating the sequence, structure, and functional information of proteins

Symmetric uncertainty class-feature association map for feature selection in microarray dataset

(2019) Soodeh Bakhshandeh et al.   International Journal of Machine Learning and Cybernetics

Decoding the Role of Platelets and Related MicroRNAs in Aging and Neurodegenerative Disorders

(2019) Yolanda Espinosa-Parrilla et al.   Frontiers in Aging Neuroscience

Boosting phosphorylation site prediction with sequence feature‐based machine learning

(2019) Shyantani Maiti et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Analysis of post-translational modifications in Alzheimer's disease by mass spectrometry

(2018) Andrea Renee Kelley et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

DeepPhos: prediction of protein phosphorylation sites with deep learning

(2018) Fenglin Luo et al.   BIOINFORMATICS

PhosPred-RF: A Novel Sequence-Based Predictor for Phosphorylation Sites Using Sequential Information Only

(2017) Leyi Wei et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Phosphorylation: Implications in Cancer

(2017) Vishakha Singh et al.   PROTEIN JOURNAL

Protein post-translational modifications: In silico prediction tools and molecular modeling

(2017) Martina Audagnotto et al.   Computational and Structural Biotechnology Journal

PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection

(2017) Jiangning Song et al.   Scientific Reports

Alternative promoter usage generates novel shorter MAPT mRNA transcripts in Alzheimer’s disease and progressive supranuclear palsy brains

(2017) Vincent Huin et al.   Scientific Reports

Regulation of mitochondrial functions by protein phosphorylation and dephosphorylation

(2016) Sangbin Lim et al.   Cell and Bioscience

GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome

(2015) Fuyi Li et al.   BIOINFORMATICS

Computational Identification of Protein Pupylation Sites by Using Profile-Based Composition of k-Spaced Amino Acid Pairs

(2015) Md. Mehedi Hasan et al.   PLoS One

PhosphoSVM: prediction of phosphorylation sites by integrating various protein sequence attributes with a support vector machine

(2014) Yongchao Dou et al.   AMINO ACIDS

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

A comparative assessment and analysis of 20 representative sequence alignment methods for protein structure prediction

(2013) Renxiang Yan et al.   Scientific Reports

Computational prediction of eukaryotic phosphorylation sites

(2011) B. Trost et al.   BIOINFORMATICS

Post-translational modifications of tau protein: Implications for Alzheimer's disease

(2011) Ludovic Martin et al.   NEUROCHEMISTRY INTERNATIONAL

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Prediction of 492 human protein kinase substrate specificities

(2011) Javad Safaei et al.   Proteome Science

Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information

(2010) Ashis Biswas et al.   BMC BIOINFORMATICS

A novel hybrid feature selection via Symmetrical Uncertainty ranking based local memetic search algorithm

(2010) S. Senthamarai Kannan et al.   KNOWLEDGE-BASED SYSTEMS

Post-translational modifications in signal integration

(2010) Yonathan Lissanu Deribe et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Identifying Human Kinase-Specific Protein Phosphorylation Sites by Integrating Heterogeneous Information from Various Sources

(2010) Tingting Li et al.   PLoS One

The regulation of protein phosphorylation

(2009) Louise N. Johnson   BIOCHEMICAL SOCIETY TRANSACTIONS

GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy

(2008) Yu Xue et al.   MOLECULAR & CELLULAR PROTEOMICS

Dissecting the role of p53 phosphorylation in homologous recombination provides new clues for gain-of-function mutants

(2008) A. Restle et al.   NUCLEIC ACIDS RESEARCH

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Prediction of RNA binding sites in a protein using SVM and PSSM profile

(2007) Manish Kumar et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS