Computational prediction of eukaryotic phosphorylation sites

Nuclear Localization of p38 MAPK in Response to DNA Damage

(2012) C. David Wood et al.   International Journal of Biological Sciences

A role for p38 MAPK in the regulation of ciliary motion in a eukaryote

(2011) Margarida Ressurreição et al.   BMC CELL BIOLOGY

Hydrogen peroxide stress stimulates phosphorylation of FoxO1 in rat aortic endothelial cells

(2010) Ye-yu Wang et al.   ACTA PHARMACOLOGICA SINICA

AMS 3.0: Prediction of Post-Translational Modifications

(2010) Subhadip Basu et al.   BMC BIOINFORMATICS

Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates

(2010) Boris Sobolev et al.   BMC BIOINFORMATICS

Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information

(2010) Ashis Biswas et al.   BMC BIOINFORMATICS

A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression

(2010) Edward L. Huttlin et al.   CELL

A Summary of Computational Resources for Protein Phosphorylation

(2010) Yu Xue et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Counter-regulation mechanism of IL-4 and IFN-α signal transduction through cytosolic retention of the pY-STAT6:pY-STAT2:p48 complex

(2010) Seol-Hee Kim et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

The role of YAP transcription coactivator in regulating stem cell self-renewal and differentiation

(2010) I. Lian et al.   GENES & DEVELOPMENT

Identifying Protein-Kinase-Specific Phosphorylation Sites Based on the Bagging–AdaBoost Ensemble Approach

(2010) Zhiwen Yu et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Insulin receptor substrate 1 regulates the cellular differentiation and the matrix metallopeptidase expression of preosteoblastic cells

(2010) Yan-Hong Bu et al.   JOURNAL OF ENDOCRINOLOGY

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS

Phospho.ELM: a database of phosphorylation sites--update 2011

(2010) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

PHOSIDA 2011: the posttranslational modification database

(2010) F. Gnad et al.   NUCLEIC ACIDS RESEARCH

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites

(2010) A. Zanzoni et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

(2010) H. Nakagami et al.   PLANT PHYSIOLOGY

Identifying Human Kinase-Specific Protein Phosphorylation Sites by Integrating Heterogeneous Information from Various Sources

(2010) Tingting Li et al.   PLoS One

GPS 2.1: enhanced prediction of kinase-specific phosphorylation sites with an algorithm of motif length selection

(2010) Y. Xue et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

(2009) Pawel Durek et al.   BMC BIOINFORMATICS

Activation of the TRPV4 Ion Channel Is Enhanced by Phosphorylation

(2009) Hueng-Chuen Fan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Phosphopeptide fragmentation and analysis by mass spectrometry

(2009) Paul J. Boersema et al.   JOURNAL OF MASS SPECTROMETRY

Genome-wide analysis to predict protein sequence variations that change phosphorylation sites or their corresponding kinases

(2009) Gil-Mi Ryu et al.   NUCLEIC ACIDS RESEARCH

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

(2009) Pawel Durek et al.   NUCLEIC ACIDS RESEARCH

Genome to Kinome: Species-Specific Peptide Arrays for Kinome Analysis

(2009) S. Jalal et al.   Science Signaling

Prediction of kinase-specific phosphorylation sites using conditional random fields

(2008) Thanh Hai Dang et al.   BIOINFORMATICS

Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites

(2008) Neil FW Saunders et al.   BMC BIOINFORMATICS

SiteSeek: Post-translational modification analysis using adaptive locality-effective kernel methods and new profiles

(2008) Paul D Yoo et al.   BMC BIOINFORMATICS

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH

Phosphorylation of SUMO-1 Occursin Vivoand Is Conserved through Evolution

(2008) Ivan Matic et al.   JOURNAL OF PROTEOME RESEARCH

Predicting Protein Post-translational Modifications Using Meta-analysis of Proteome Scale Data Sets

(2008) Daniel Schwartz et al.   MOLECULAR & CELLULAR PROTEOMICS

GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy

(2008) Yu Xue et al.   MOLECULAR & CELLULAR PROTEOMICS

The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information

(2008) N. F. W. Saunders et al.   NUCLEIC ACIDS RESEARCH

Meta-prediction of phosphorylation sites with weighted voting and restricted grid search parameter selection

(2008) Ji Wan et al.   NUCLEIC ACIDS RESEARCH

Prediction of phosphotyrosine signaling networks using a scoring matrix-assisted ligand identification approach

(2008) Lei Li et al.   NUCLEIC ACIDS RESEARCH

Charge environments around phosphorylation sites in proteins

(2008) James Kitchen et al.   BMC STRUCTURAL BIOLOGY

Prediction of PK-specific phosphorylation site based on information entropy

(2008) MingHui Wang et al.   Science in China. Series C, Life sciences / Chinese Academy of Sciences

A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach

(2008) Peng Wang et al.   PLoS Computational Biology

Tau Protein Is Hyperphosphorylated in a Site-Specific Manner in Apoptotic Neuronal PC12 Cells

(2003) Jianwen Zhang et al.   JOURNAL OF NEUROCHEMISTRY