- Home
- Publications
- Publication Search
- Publication Details
Title
Accurate Modeling of Excitonic Coupling in Cyanine Dye Cy3
Authors
Keywords
-
Journal
JOURNAL OF PHYSICAL CHEMISTRY A
Volume 125, Issue 36, Pages 7852-7866
Publisher
American Chemical Society (ACS)
Online
2021-09-08
DOI
10.1021/acs.jpca.1c05556
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Benchmarking TD-DFT and Wave Function Methods for Oscillator Strengths and Excited-State Dipole Moments
- (2021) Rudraditya Sarkar et al. Journal of Chemical Theory and Computation
- Frenkel–Holstein Hamiltonian applied to absorption spectra of quaterthiophene-based 2D hybrid organic–inorganic perovskites
- (2020) Svenja M. Janke et al. JOURNAL OF CHEMICAL PHYSICS
- Dependence of Fluorescence Quenching of CY3 Oligonucleotide Conjugates on the Oxidation Potential of the Stacking Base Pair
- (2020) Jens Sobek et al. MOLECULES
- Real-Time Propagation TDDFT and Density Analysis for Exciton Coupling Calculations in Large Systems
- (2019) Joaquim Jornet-Somoza et al. Journal of Chemical Theory and Computation
- Initial state of DNA-Dye complex sets the stage for protein induced fluorescence modulation
- (2019) Fahad Rashid et al. Nature Communications
- Protein Environment and DNA Orientation Affect Protein-Induced Cy3 Fluorescence Enhancement
- (2019) Binh Nguyen et al. BIOPHYSICAL JOURNAL
- Resonance Energy Transfer: From Fundamental Theory to Recent Applications
- (2019) Garth A. Jones et al. Frontiers in Physics
- Perylene Diimide-Based Hj- and hJ-Aggregates: The Prospect of Exciton Band Shape Engineering in Organic Materials
- (2019) April Oleson et al. Journal of Physical Chemistry C
- Expanded Theory of H- and J-Molecular Aggregates: The Effects of Vibronic Coupling and Intermolecular Charge Transfer
- (2018) Nicholas J. Hestand et al. CHEMICAL REVIEWS
- Temperature-dependent conformations of exciton-coupled Cy3 dimers in double-stranded DNA
- (2018) Loni Kringle et al. JOURNAL OF CHEMICAL PHYSICS
- Accurate Evaluation of Real-Time Density Functional Theory Providing Access to Challenging Electron Dynamics
- (2018) Ingo Schelter et al. Journal of Chemical Theory and Computation
- For a Correct Application of the CD Exciton Chirality Method: The Case of Laucysteinamide A
- (2018) Gennaro Pescitelli Marine Drugs
- Importance and Nature of Short-Range Excitonic Interactions in Light Harvesting Complexes and Organic Semiconductors
- (2017) Rocco P. Fornari et al. Journal of Chemical Theory and Computation
- Theory of FRET “Spectroscopic Ruler” for Short Distances: Application to Polyproline
- (2017) Ekaterina Sobakinskaya et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Coulomb couplings in solubilised light harvesting complex II (LHCII): challenging the ideal dipole approximation from TDDFT calculations
- (2017) P. López-Tarifa et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Green and Red Fluorescent Dyes for Translational Applications in Imaging and Sensing Analytes: A Dual-Color Flag
- (2017) Elisabete Oliveira et al. ChemistryOpen
- Sequence-Dependent Fluorescence of Cy3- and Cy5-Labeled Double-Stranded DNA
- (2016) Nicole Kretschy et al. BIOCONJUGATE CHEMISTRY
- Good Computational Practice in the Assignment of Absolute Configurations by TDDFT Calculations of ECD Spectra
- (2016) Gennaro Pescitelli et al. CHIRALITY
- Proximity-Induced H-Aggregation of Cyanine Dyes on DNA-Duplexes
- (2016) Francesca Nicoli et al. JOURNAL OF PHYSICAL CHEMISTRY A
- Taking Up the Cyanine Challenge with Quantum Tools
- (2015) Boris Le Guennic et al. ACCOUNTS OF CHEMICAL RESEARCH
- Effect of cucurbituril on the primary photoprocesses in indocarbocyanine dyes in water
- (2015) G. V. Zakharova et al. HIGH ENERGY CHEMISTRY
- Why Do TD-DFT Excitation Energies of BODIPY/Aza-BODIPY Families Largely Deviate from Experiment? Answers from Electron Correlated and Multireference Methods
- (2015) Mohammad R. Momeni et al. Journal of Chemical Theory and Computation
- On the origin of oscillations in two-dimensional spectra of excitonically-coupled molecular systems
- (2015) Hong-Guang Duan et al. NEW JOURNAL OF PHYSICS
- Electronic coupling calculations with transition charges, dipoles, and quadrupoles derived from electrostatic potential fitting
- (2014) Kazuhiro J. Fujimoto JOURNAL OF CHEMICAL PHYSICS
- Fragment transition density method to calculate electronic coupling for excitation energy transfer
- (2014) Alexander A. Voityuk JOURNAL OF CHEMICAL PHYSICS
- Applications of Time Dependent and Time Independent Density Functional Theory to the First π to π* Transition in Cyanine Dyes
- (2014) Hristina Zhekova et al. Journal of Chemical Theory and Computation
- Advances in molecular quantum chemistry contained in the Q-Chem 4 program package
- (2014) Yihan Shao et al. MOLECULAR PHYSICS
- Two-dimensional spectroscopy of a molecular dimer unveils the effects of vibronic coupling on exciton coherences
- (2014) Alexei Halpin et al. Nature Chemistry
- Internally labeled Cy3/Cy5 DNA constructs show greatly enhanced photo-stability in single-molecule FRET experiments
- (2014) Wonbae Lee et al. NUCLEIC ACIDS RESEARCH
- Evaluation of Chemical Fluorescent Dyes as a Protein Conjugation Partner for Live Cell Imaging
- (2014) Yoko Hayashi-Takanaka et al. PLoS One
- The algebraic diagrammatic construction scheme for the polarization propagator for the calculation of excited states
- (2014) Andreas Dreuw et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
- A Single-Molecule View of the Assembly Pathway, Subunit Stoichiometry, and Unwinding Activity of the Bacteriophage T4 Primosome (helicase–primase) Complex
- (2013) Wonbae Lee et al. BIOCHEMISTRY
- Protein induced fluorescence enhancement (PIFE) for probing protein–nucleic acid interactions
- (2013) Helen Hwang et al. CHEMICAL SOCIETY REVIEWS
- Theory and calculation for the electronic coupling in excitation energy transfer
- (2013) Zhi-Qiang You et al. INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY
- A Benchmark of Excitonic Couplings Derived from Atomic Transition Charges
- (2013) Kurt A. Kistler et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Structure-based modeling of energy transfer in photosynthesis
- (2013) Thomas Renger et al. PHOTOSYNTHESIS RESEARCH
- Single-molecule FRET and linear dichroism studies of DNA breathing and helicase binding at replication fork junctions
- (2013) C. Phelps et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biosupramolecular Nanowires from Chlorophyll Dyes with Exceptional Charge-Transport Properties
- (2012) Sanchita Sengupta et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Energy migration and fluorescence
- (2012) Theodor Förster JOURNAL OF BIOMEDICAL OPTICS
- Long-Range Corrected Hybrid Density Functionals with Improved Dispersion Corrections
- (2012) You-Sheng Lin et al. Journal of Chemical Theory and Computation
- Electronic Excitations of Simple Cyanine Dyes: Reconciling Density Functional and Wave Function Methods
- (2011) Robert Send et al. Journal of Chemical Theory and Computation
- Multiwfn: A multifunctional wavefunction analyzer
- (2011) Tian Lu et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Dependence of Resonance Energy Transfer on Exciton Dimensionality
- (2011) Jan Junis Rindermann et al. PHYSICAL REVIEW LETTERS
- Variational configuration interaction methods and comparison with perturbation theory
- (2010) J. A. Pople et al. INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY
- Theoretical Study of the Optical Properties of Artificial Self-Assembled Zinc Chlorins
- (2010) Sameer Patwardhan et al. Journal of Physical Chemistry C
- Energy transfer and Förster’s dipole coupling approximation investigated in a real-time Kohn-Sham scheme
- (2010) D. Hofmann et al. PHYSICAL REVIEW A
- Cyanine dyes in biophysical research: the photophysics of polymethine fluorescent dyes in biomolecular environments
- (2010) Marcia Levitus et al. QUARTERLY REVIEWS OF BIOPHYSICS
- AN EMPIRICAL WAY TO CORRECT SOME DRAWBACKS OF MULLIKEN POPULATION ANALYSIS
- (2010) JUAN S GÓMEZ-JERIA JOURNAL OF THE CHILEAN CHEMICAL SOCIETY
- Fretting about FRET: Failure of the Ideal Dipole Approximation
- (2009) Aurora Muñoz-Losa et al. BIOPHYSICAL JOURNAL
- Ideal dipole approximation fails to predict electronic coupling and energy transfer between semiconducting single-wall carbon nanotubes
- (2009) Cathy Y. Wong et al. JOURNAL OF CHEMICAL PHYSICS
- Photophysics of Cy3-Encapsulated Calcium Phosphate Nanoparticles
- (2009) Hari S. Muddana et al. NANO LETTERS
- Bright Ideas for Chemical Biology
- (2008) Luke D. Lavis et al. ACS Chemical Biology
- Extracting single and two-exciton couplings in photosynthetic complexes by coherent two-dimensional electronic spectra
- (2008) Darius Abramavicius et al. CHEMICAL PHYSICS
- Calculations of the exciton coupling elements between the DNA bases using the transition density cube method
- (2008) Arkadiusz Czader et al. JOURNAL OF CHEMICAL PHYSICS
- Cy3-Cy5 Covalent Heterodimers for Single-Molecule Photoswitching
- (2008) Nicholas R. Conley et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Characterization of the Short-Range Couplings in Excitation Energy Transfer
- (2008) Chao-Ping Hsu et al. Journal of Physical Chemistry C
- A practical guide to single-molecule FRET
- (2008) Rahul Roy et al. NATURE METHODS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now