Structure-based modeling of energy transfer in photosynthesis

Influence of Site-Dependent Pigment–Protein Interactions on Excitation Energy Transfer in Photosynthetic Light Harvesting

(2013) Eva Rivera et al.   JOURNAL OF PHYSICAL CHEMISTRY B

On the Shape of the Phonon Spectral Density in Photosynthetic Complexes

(2013) Adam Kell et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Understanding photosynthetic light-harvesting: a bottom up theoretical approach

(2013) Thomas Renger et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

The Qy Absorption Spectrum of the Light-Harvesting Complex II As Determined by Structure-Based Analysis of Chlorophyll Macrocycle Deformations

(2012) Giuseppe Zucchelli et al.   BIOCHEMISTRY

Refined structure-based simulation of plant light-harvesting complex II: Linear optical spectra of trimers and aggregates

(2012) Frank Müh et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Atomistic Study of the Long-Lived Quantum Coherences in the Fenna-Matthews-Olson Complex

(2012) Sangwoo Shim et al.   BIOPHYSICAL JOURNAL

The nature of the low energy band of the Fenna-Matthews-Olson complex: Vibronic signatures

(2012) Felipe Caycedo-Soler et al.   JOURNAL OF CHEMICAL PHYSICS

Extension of local response dispersion method to excited-state calculation based on time-dependent density functional theory

(2012) Yasuhiro Ikabata et al.   JOURNAL OF CHEMICAL PHYSICS

Transition-density-fragment interaction combined with transfer integral approach for excitation-energy transfer via charge-transfer states

(2012) Kazuhiro J. Fujimoto   JOURNAL OF CHEMICAL PHYSICS

Normal Mode Analysis of the Spectral Density of the Fenna–Matthews–Olson Light-Harvesting Protein: How the Protein Dissipates the Excess Energy of Excitons

(2012) Thomas Renger et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Origin of Long-Lived Coherences in Light-Harvesting Complexes

(2012) Niklas Christensson et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Long-Lived Electronic Coherence in Dissipative Exciton Dynamics of Light-Harvesting Complexes

(2012) Christoph Kreisbeck et al.   Journal of Physical Chemistry Letters

Quantum Chemical Description of Absorption Properties and Excited-State Processes in Photosynthetic Systems

(2011) Carolin König et al.   CHEMPHYSCHEM

Theoretical Study of the Electronic–Vibrational Coupling in the Qy States of the Photosynthetic Reaction Center in Purple Bacteria

(2011) Yuanyuan Jing et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Theory and Simulation of the Environmental Effects on FMO Electronic Transitions

(2011) Carsten Olbrich et al.   Journal of Physical Chemistry Letters

Photosynthetic Light-Harvesting Is Tuned by the Heterogeneous Polarizable Environment of the Protein

(2011) Carles Curutchet et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å

(2011) Yasufumi Umena et al.   NATURE

Structure-based simulation of linear optical spectra of the CP43 core antenna of photosystem II

(2011) Frank Müh et al.   PHOTOSYNTHESIS RESEARCH

Theory of excitonic couplings in dielectric media

(2011) Thomas Renger et al.   PHOTOSYNTHESIS RESEARCH

Exciton transfer dynamics and quantumness of energy transfer in the Fenna-Matthews-Olson complex

(2011) P. Nalbach et al.   PHYSICAL REVIEW E

Primary Photophysical Processes in Photosystem II: Bridging the Gap between Crystal Structure and Optical Spectra

(2010) Thomas Renger et al.   CHEMPHYSCHEM

Transition-density-fragment interaction approach for exciton-coupled circular dichroism spectra

(2010) Kazuhiro J. Fujimoto   JOURNAL OF CHEMICAL PHYSICS

Exact mapping between system-reservoir quantum models and semi-infinite discrete chains using orthogonal polynomials

(2010) Alex W. Chin et al.   JOURNAL OF MATHEMATICAL PHYSICS

Structure-Based Identification of Energy Sinks in Plant Light-Harvesting Complex II

(2010) Frank Müh et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Quest for Spatially Correlated Fluctuations in the FMO Light-Harvesting Complex

(2010) Carsten Olbrich et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The Eighth Bacteriochlorophyll Completes the Excitation Energy Funnel in the FMO Protein

(2010) Marcel Schmidt am Busch et al.   Journal of Physical Chemistry Letters

Structure-Based Calculations of Optical Spectra of Photosystem I Suggest an Asymmetric Light-Harvesting Process

(2010) Julian Adolphs et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Physical origins and models of energy transfer in photosynthetic light-harvesting

(2010) Vladimir I. Novoderezhkin et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Subsystem-Based Theoretical Spectroscopy of Biomolecules and Biomolecular Assemblies

(2009) Johannes Neugebauer   CHEMPHYSCHEM

Unified treatment of quantum coherent and incoherent hopping dynamics in electronic energy transfer: Reduced hierarchy equation approach

(2009) Akihito Ishizaki et al.   JOURNAL OF CHEMICAL PHYSICS

Deciphering the Influence of Short-Range Electronic Couplings on Optical Properties of Molecular Dimers: Application to “Special Pairs” in Photosynthesis

(2009) Mohamed El-Amine Madjet et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Thermally Activated Superradiance and Intersystem Crossing in the Water-Soluble Chlorophyll Binding Protein

(2009) T. Renger et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Electronic Coulombic Coupling of Excitation-Energy Transfer in Xanthorhodopsin

(2009) Kazuhiro J. Fujimoto et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Reliable Prediction of Charge Transfer Excitations in Molecular Complexes Using Time-Dependent Density Functional Theory

(2009) Tamar Stein et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria

(2009) Dale E. Tronrud et al.   PHOTOSYNTHESIS RESEARCH

Membrane orientation of the FMO antenna protein from Chlorobaculum tepidum as determined by mass spectrometry-based footprinting

(2009) J. Wen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Density-fragment interaction approach for quantum-mechanical/molecular-mechanical calculations with application to the excited states of a Mg2+-sensitive dye

(2008) Kazuhiro Fujimoto et al.   JOURNAL OF CHEMICAL PHYSICS

Three-Dimensional Orientation of the QyElectronic Transition Dipole Moment within the ChlorophyllaMolecule Determined by Femtosecond Polarization Resolved VIS Pump−IR Probe Spectroscopy

(2008) Martin Linke et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Light Harvesting in Photosystem II Core Complexes Is Limited by the Transfer to the Trap:  Can the Core Complex Turn into a Photoprotective Mode?

(2008) Grzegorz Raszewski et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Theory of solvatochromic shifts in nonpolar solvents reveals a new spectroscopic rule

(2008) T. Renger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA