Neural anatomy and optical microscopy (NAOMi) simulation for evaluating calcium imaging methods
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Title
Neural anatomy and optical microscopy (NAOMi) simulation for evaluating calcium imaging methods
Authors
Keywords
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Journal
JOURNAL OF NEUROSCIENCE METHODS
Volume 358, Issue -, Pages 109173
Publisher
Elsevier BV
Online
2021-04-08
DOI
10.1016/j.jneumeth.2021.109173
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Note: Only part of the references are listed.- Soma-Targeted Imaging of Neural Circuits by Ribosome Tethering
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- (2016) Lucas Theis et al. NEURON
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- (2016) Eftychios A. Pnevmatikakis et al. NEURON
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- (2015) Natalya Korogod et al. eLife
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