Transcriptome Analysis Identifies GATA3-AS1 as a Long Noncoding RNA Associated with Resistance to Neoadjuvant Chemotherapy in Locally Advanced Breast Cancer Patients

GATA3 somatic mutations are associated with clinicopathological features and expression profile in TCGA breast cancer patients

(2021) Fahimeh Afzaljavan et al.   Scientific Reports

Variability in estimated gene expression among commonly used RNA-seq pipelines

(2020) Sonali Arora et al.   Scientific Reports

Neural Functions Play Different Roles in Triple Negative Breast Cancer (TNBC) and non-TNBC

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The lncRNA-GAS5/miR-221-3p/DKK2 Axis Modulates ABCB1-Mediated Adriamycin Resistance of Breast Cancer via the Wnt/β-Catenin Signaling Pathway

(2020) Zhaolin Chen et al.   Molecular Therapy-Nucleic Acids

LncRNA GATA3‐AS1 facilitates tumour progression and immune escape in triple‐negative breast cancer through destabilization of GATA3 but stabilization of PD‐L1

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The Relationship of GATA3 and Ki-67 With Histopathological Prognostic Parameters, Locoregional Recurrence and Disease-free Survival in Invasive Ductal Carcinoma of the Breast

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Pan-cancer analysis reveals TAp63-regulated oncogenic lncRNAs that promote cancer progression through AKT activation

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Predictive markers for pathological complete response after neo-adjuvant chemotherapy in triple-negative breast cancer

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Liquid biopsy and minimal residual disease — latest advances and implications for cure

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Ki-67 labeling index as a predictor of response to neoadjuvant chemotherapy in breast cancer

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Locally advanced breast cancer treated with neoadjuvant chemotherapy and adjuvant radiotherapy: a retrospective cohort analysis

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Identification of lnc RNA s associated with early‐stage breast cancer and their prognostic implications

(2019) Arunagiri Kuha Deva Magendhra Rao et al.   Molecular Oncology

LncRNA Profile Study Reveals a Three-LncRNA Signature Associated With the Pathological Complete Response Following Neoadjuvant Chemotherapy in Breast Cancer

(2019) Ying Zeng et al.   Frontiers in Pharmacology

LncRNA-p21 alters the antiandrogen enzalutamide-induced prostate cancer neuroendocrine differentiation via modulating the EZH2/STAT3 signaling

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Breast cancer

(2019) Nadia Harbeck et al.   Nature Reviews Disease Primers

Long Noncoding RNA GATA3-AS1 Promotes Cell Proliferation and Metastasis in Hepatocellular Carcinoma by Suppression of PTEN, CDKN1A, and TP53

(2019) Xuee Luo et al.   Canadian Journal of Gastroenterology and Hepatology

A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers

(2018) Ashton C. Berger et al.   CANCER CELL

lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer

(2018) Zehua Wang et al.   CANCER CELL

Ki67 Changes Identify Worse Outcomes in Residual Breast Cancer Tumors After Neoadjuvant Chemotherapy

(2018) Paula Cabrera‐Galeana et al.   ONCOLOGIST

Targeting the IGF1R Pathway in Breast Cancer Using Antisense lncRNA-Mediated Promoter cis Competition

(2018) Lingling Pian et al.   Molecular Therapy-Nucleic Acids

Epigenetic and Transcriptomic Profiling of Mammary Gland Development and Tumor Models Disclose Regulators of Cell State Plasticity

(2018) Christopher Dravis et al.   CANCER CELL

A Minimal lncRNA-mRNA Signature Predicts Sensitivity to Neoadjuvant Chemotherapy in Triple-Negative Breast Cancer

(2018) Qian Wang et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Long Non-Coding RNAs as New Master Regulators of Resistance to Systemic Treatments in Breast Cancer

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Statistical analysis of patient-reported outcome data in randomised controlled trials of locally advanced and metastatic breast cancer: a systematic review

(2018) Madeline Pe et al.   LANCET ONCOLOGY

lncRNA profile study reveals the mRNAs and lncRNAs associated with docetaxel resistance in breast cancer cells

(2018) Peide Huang et al.   Scientific Reports

Divergent lncRNA GATA3-AS1 Regulates GATA3 Transcription in T-Helper 2 Cells

(2018) Hunter R. Gibbons et al.   Frontiers in Immunology

Clinical use of biomarkers in breast cancer: Updated guidelines from the European Group on Tumor Markers (EGTM)

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Ki67 Proliferation Index as a Tool for Chemotherapy Decisions During and After Neoadjuvant Aromatase Inhibitor Treatment of Breast Cancer: Results From the American College of Surgeons Oncology Group Z1031 Trial (Alliance)

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Salmon provides fast and bias-aware quantification of transcript expression

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Clinical utility of gene-expression signatures in early stage breast cancer

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A Long Noncoding RNA Signature That Predicts Pathological Complete Remission Rate Sensitively in Neoadjuvant Treatment of Breast Cancer

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The lncRNA BORG Drives Breast Cancer Metastasis and Disease Recurrence

(2017) Alex J. Gooding et al.   Scientific Reports

RNA Sequencing to Predict Response to Neoadjuvant Anti-HER2 Therapy

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LncRNAs2Pathways: Identifying the pathways influenced by a set of lncRNAs of interest based on a global network propagation method

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Long Noncoding RNAs in Cancer Pathways

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Molecular Testing and the Pathologist's Role in Clinical Trials of Breast Cancer

(2016) Hyo Sook Han et al.   Clinical Breast Cancer

The role of GATA3 in breast carcinomas: a review

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Potential of long non-coding RNAs in cancer patients: From biomarkers to therapeutic targets

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Unique features of long non-coding RNA biogenesis and function

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GATA-3 expression is not associated with complete pathological response in triple negative breast cancer patients treated with neoadjuvant chemotherapy

(2016) Jason K. Wasserman et al.   PATHOLOGY RESEARCH AND PRACTICE

The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression

(2016) Yashar S. Niknafs et al.   Nature Communications

Long non-coding RNAs in anti-cancer drug resistance

(2016) Qin-nan Chen et al.   Oncotarget

Mammary Tumor-Associated RNAs Impact Tumor Cell Proliferation, Invasion, and Migration

(2016) Sarah D. Diermeier et al.   Cell Reports

Long intergenic non-coding RNA expression signature in human breast cancer

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Tailoring therapies—improving the management of early breast cancer: St Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2015

(2015) A. S. Coates et al.   ANNALS OF ONCOLOGY

Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers

(2015) Xiaohui Yan et al.   CANCER CELL

The Significance and Therapeutic Potential of GATA3 Expression and Mutation in Breast Cancer: A Systematic Review

(2015) Feng Du et al.   MEDICINAL RESEARCH REVIEWS

The landscape of long noncoding RNAs in the human transcriptome

(2015) Matthew K Iyer et al.   NATURE GENETICS

Management of locally advanced breast cancer—perspectives and future directions

(2015) Konstantinos Tryfonidis et al.   Nature Reviews Clinical Oncology

LncRNA HOTAIR enhances ER signaling and confers tamoxifen resistance in breast cancer

(2015) X Xue et al.   ONCOGENE

Prognostic and predictive values of long non-coding RNA LINC00472 in breast cancer

(2015) Yi Shen et al.   Oncotarget

LncRNA-ATB promotes trastuzumab resistance and invasion-metastasis cascade in breast cancer

(2015) Sheng-Jia Shi et al.   Oncotarget

A potential prognostic long non-coding RNA signature to predict metastasis-free survival of breast cancer patients

(2015) Jie Sun et al.   Scientific Reports

Genome-wide DNA methylome analysis reveals epigenetically dysregulated non-coding RNAs in human breast cancer

(2015) Yongsheng Li et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

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Public health national approach to reducing breast and cervical cancer disparities

(2014) Jacqueline W. Miller et al.   CANCER

Long non-coding RNA UCA1 increases chemoresistance of bladder cancer cells by regulating Wnt signaling

(2014) Yu Fan et al.   FEBS Journal

Pathological complete response and long-term clinical benefit in breast cancer: the CTNeoBC pooled analysis

(2014) Patricia Cortazar et al.   LANCET

Profiling of human CD4+ T-cell subsets identifies the TH2-specific noncoding RNA GATA3-AS1

(2013) Huan Zhang et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Inferring tumour purity and stromal and immune cell admixture from expression data

(2013) Kosuke Yoshihara et al.   Nature Communications

Clinicopathological analysis of GATA3-positive breast cancers with special reference to response to neoadjuvant chemotherapy

(2012) N. Tominaga et al.   ANNALS OF ONCOLOGY

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Relevance of BCAR4 in tamoxifen resistance and tumour aggressiveness of human breast cancer

(2010) M F E Godinho et al.   BRITISH JOURNAL OF CANCER

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

(2010) Rajnish A. Gupta et al.   NATURE

CDK Inhibitor p18INK4c Is a Downstream Target of GATA3 and Restrains Mammary Luminal Progenitor Cell Proliferation and Tumorigenesis

(2009) Xin-Hai Pei et al.   CANCER CELL

Convergent random forest predictor: Methodology for predicting drug response from genome-scale data applied to anti-TNF response

(2009) Jadwiga R. Bienkowska et al.   GENOMICS

Neoadjuvant Chemotherapy for Locally Advanced Breast Cancer

(2009) Jennifer Specht et al.   SEMINARS IN RADIATION ONCOLOGY

ConsensusPathDB—a database for integrating human functional interaction networks

(2008) Atanas Kamburov et al.   NUCLEIC ACIDS RESEARCH