Intestinal virome and therapeutic potential of bacteriophages in liver disease

A Roadmap for Genome-Based Phage Taxonomy

(2021) Dann Turner et al.   Viruses-Basel

Engineering the Modular Receptor-Binding Proteins of Klebsiella Phages Switches Their Capsule Serotype Specificity

(2021) Agnieszka Latka et al.   mBio

Gangliosides are essential endosomal receptors for quasi-enveloped and naked hepatitis A virus

(2020) Anshuman Das et al.   Nature Microbiology

Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease

(2020) Sonja Lang et al.   GASTROENTEROLOGY

Intestinal virome in patients with alcoholic hepatitis

(2020) Lu Jiang et al.   HEPATOLOGY

Gut microbiome in primary sclerosing cholangitis: A review

(2020) Rebecca Little et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients

(2020) Sonja Lang et al.   Gut Microbes

Autoimmune Hepatitis: Shifts in Gut Microbiota and Metabolic Pathways among Egyptian Patients

(2020) Nahla M. Elsherbiny et al.   Microorganisms

Interaction of bacterial metagenome and virome in patients with cirrhosis and hepatic encephalopathy

(2020) Jasmohan S Bajaj et al.   GUT

PHAGE-2 Study: Supplemental Bacteriophages Extend Bifidobacterium animalis subsp. lactis BL04 Benefits on Gut Health and Microbiota in Healthy Adults

(2020) Diana S. Grubb et al.   Nutrients

Cross-Domain and Viral Interactions in the Microbiome

(2019) Aislinn D. Rowan-Nash et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Gut pathobionts underlie intestinal barrier dysfunction and liver T helper 17 cell immune response in primary sclerosing cholangitis

(2019) Nobuhiro Nakamoto et al.   Nature Microbiology

A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease

(2019) Cyrielle Caussy et al.   Nature Communications

Fungi participate in the dysbiosis of gut microbiota in patients with primary sclerosing cholangitis

(2019) Sara Lemoinne et al.   GUT

Consistent alterations in faecal microbiomes of patients with primary sclerosing cholangitis independent of associated colitis

(2019) Malte Rühlemann et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Alterations of gut microbiome in autoimmune hepatitis

(2019) Yiran Wei et al.   GUT

Contemporary Epidemiology of Chronic Liver Disease and Cirrhosis

(2019) Andrew M. Moon et al.   Clinical Gastroenterology and Hepatology

Engineering Phage Host-Range and Suppressing Bacterial Resistance through Phage Tail Fiber Mutagenesis

(2019) Kevin Yehl et al.   CELL

Fatty Liver Disease Caused by High-Alcohol-Producing Klebsiella pneumoniae

(2019) Jing Yuan et al.   Cell Metabolism

Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease

(2019) Yi Duan et al.   NATURE

Reprogramming Bacteriophage Host Range through Structure-Guided Design of Chimeric Receptor Binding Proteins

(2019) Matthew Dunne et al.   Cell Reports

Link between gut-microbiome derived metabolite and shared gene-effects with hepatic steatosis and fibrosis in NAFLD

(2018) Cyrielle Caussy et al.   HEPATOLOGY

Hepatocellular carcinoma is associated with gut microbiota profile and inflammation in nonalcoholic fatty liver disease

(2018) Francesca Romana Ponziani et al.   HEPATOLOGY

Gut microbiome composition in lean patients with NASH is associated with liver damage independent of caloric intake: A prospective pilot study

(2018) S.M.B. Duarte et al.   NUTRITION METABOLISM AND CARDIOVASCULAR DISEASES

Cross-genus rebooting of custom-made, synthetic bacteriophage genomes in L-form bacteria

(2018) Samuel Kilcher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Translocation of a gut pathobiont drives autoimmunity in mice and humans

(2018) S. Manfredo Vieira et al.   SCIENCE

Nonalcoholic fatty liver disease is associated with dysbiosis independent of body mass index and insulin resistance

(2018) Hannah E. Da Silva et al.   Scientific Reports

Autoimmune hepatitis

(2018) Giorgina Mieli-Vergani et al.   Nature Reviews Disease Primers

Adherent-invasiveEscherichia coliin inflammatory bowel disease

(2017) Carolina Palmela et al.   GUT

Recovery of ethanol-inducedAkkermansia muciniphiladepletion ameliorates alcoholic liver disease

(2017) Christoph Grander et al.   GUT

Gut microbiota dysbiosis in patients with non-alcoholic fatty liver disease

(2017) Feng Shen et al.   Hepatobiliary & Pancreatic Diseases International

Distinct gut microbiota profiles in patients with primary sclerosing cholangitis and ulcerative colitis

(2017) Lukas Bajer et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Oral application ofEscherichia colibacteriophage: safety tests in healthy and diarrheal children from Bangladesh

(2016) Shafiqul Alam Sarker et al.   ENVIRONMENTAL MICROBIOLOGY

Faecal microbiota profiles as diagnostic biomarkers in primary sclerosing cholangitis

(2016) Malte Christoph Rühlemann et al.   GUT

Primary sclerosing cholangitis is characterised by intestinal dysbiosis independent from IBD

(2016) João Sabino et al.   GUT

The gut microbial profile in patients with primary sclerosing cholangitis is distinct from patients with ulcerative colitis without biliary disease and healthy controls

(2016) Martin Kummen et al.   GUT

Gut microbiota profiling of pediatric nonalcoholic fatty liver disease and obese patients unveiled by an integrated meta-omics-based approach

(2016) Federica Del Chierico et al.   HEPATOLOGY

The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota

(2016) Jérôme Boursier et al.   HEPATOLOGY

The Human Intestinal Microbiome in Health and Disease

(2016) Susan V. Lynch et al.   NEW ENGLAND JOURNAL OF MEDICINE

Healthy human gut phageome

(2016) Pilar Manrique et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oral Phage Therapy of Acute Bacterial Diarrhea With Two Coliphage Preparations: A Randomized Trial in Children From Bangladesh

(2016) Shafiqul Alam Sarker et al.   EBioMedicine

Dysbiosis of small intestinal microbiota in liver cirrhosis and its association with etiology

(2016) Yanfei Chen et al.   Scientific Reports

Altered Fecal Microbiota Correlates with Liver Biochemistry in Nonobese Patients with Non-alcoholic Fatty Liver Disease

(2016) Baohong Wang et al.   Scientific Reports

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

(2015) Jason M. Norman et al.   CELL

Nonalcoholic Fatty Liver Disease

(2015) Mary E. Rinella   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Decompensated cirrhosis and microbiome interpretation

(2015) Jasmohan S. Bajaj et al.   NATURE

Revisiting phage therapy: new applications for old resources

(2015) Franklin L. Nobrega et al.   TRENDS IN MICROBIOLOGY

Antimicrobial resistance: a global multifaceted phenomenon

(2015) Francesca Prestinaci et al.   Pathogens and Global Health

Engineering Modular Viral Scaffolds for Targeted Bacterial Population Editing

(2015) Hiroki Ando et al.   Cell Systems

Changes in gut bacterial populations and their translocation into liver and ascites in alcoholic liver cirrhotics

(2014) Sari Tuomisto et al.   BMC GASTROENTEROLOGY

Alterations of the human gut microbiome in liver cirrhosis

(2014) Nan Qin et al.   NATURE

Intestinal permeability, gut-bacterial dysbiosis, and behavioral markers of alcohol-dependence severity

(2014) Sophie Leclercq et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Therapeutic and Prophylactic Applications of Bacteriophage Components in Modern Medicine

(2014) S. Adhya et al.   Cold Spring Harbor Perspectives in Medicine

Naked Viruses That Aren't Always Naked: Quasi-Enveloped Agents of Acute Hepatitis

(2014) Zongdi Feng et al.   Annual Review of Virology

Fecal Microbiome and Volatile Organic Compound Metabolome in Obese Humans With Nonalcoholic Fatty Liver Disease

(2013) Maitreyi Raman et al.   Clinical Gastroenterology and Hepatology

Altered profile of human gut microbiome is associated with cirrhosis and its complications

(2013) Jasmohan S. Bajaj et al.   JOURNAL OF HEPATOLOGY

Genetic modifications to temperate Enterococcus faecalis phage  Ef11 that abolish the establishment of lysogeny and sensitivity to repressor, and increase host range and productivity of lytic infection

(2013) H. Zhang et al.   MICROBIOLOGY-SGM

Safety analysis of a Russian phage cocktail: From MetaGenomic analysis to oral application in healthy human subjects

(2013) Shawna McCallin et al.   VIROLOGY

Colonic mucosal microbiome differs from stool microbiome in cirrhosis and hepatic encephalopathy and is linked to cognition and inflammation

(2012) Jasmohan S. Bajaj et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Colonic microbiome is altered in alcoholism

(2012) Ece A. Mutlu et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: A connection between endogenous alcohol and NASH

(2012) Lixin Zhu et al.   HEPATOLOGY

Structure of the receptor-binding carboxy-terminal domain of bacteriophage T7 tail fibers

(2012) C. Garcia-Doval et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oral T4-like phage cocktail application to healthy adult volunteers from Bangladesh

(2012) Shafiqul Alam Sarker et al.   VIROLOGY

Linkage of gut microbiome with cognition in hepatic encephalopathy

(2011) Jasmohan S. Bajaj et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Biocontrol of Listeria monocytogenes and Escherichia coli O157:H7 in Meat by Using Phages Immobilized on Modified Cellulose Membranes

(2011) H. Anany et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Inactivation of Escherichia coli O157:H7 Attached to Spinach Harvester Blade Using Bacteriophage

(2011) Jitendra Patel et al.   Foodborne Pathogens and Disease

The human gut virome: Inter-individual variation and dynamic response to diet

(2011) S. Minot et al.   GENOME RESEARCH

Characterization of fecal microbial communities in patients with liver cirrhosis

(2011) Yanfei Chen et al.   HEPATOLOGY

Application of a bacteriophage cocktail to reduce Salmonella Typhimurium U288 contamination on pig skin

(2011) Steven P.T. Hooton et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Biocontrol of Salmonella Typhimurium in RTE foods with the virulent bacteriophage FO1-E2

(2011) Susanne Guenther et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Role of bacteriophage SPP1 tail spike protein gp21 on host cell receptor binding and trigger of phage DNA ejection

(2011) Inês Vinga et al.   MOLECULAR MICROBIOLOGY

Phage Choice, Isolation, and Preparation for Phage Therapy

(2010) Jason Gill et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

Genetic Diversity and Virulence Profiles of Escherichia coli Isolates Causing Spontaneous Bacterial Peritonitis and Bacteremia in Patients with Cirrhosis

(2010) F. Bert et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Viruses in the faecal microbiota of monozygotic twins and their mothers

(2010) Alejandro Reyes et al.   NATURE

Gut Microbiota in Health and Disease

(2010) Inna Sekirov et al.   PHYSIOLOGICAL REVIEWS

Phage Therapy To Reduce Preprocessing Salmonella Infections in Market-Weight Swine

(2009) S. K. Wall et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Environmental pollution by antibiotics and by antibiotic resistance determinants

(2009) Jose Luis Martinez   ENVIRONMENTAL POLLUTION

Virulent Bacteriophage for Efficient Biocontrol of Listeria monocytogenes in Ready-To-Eat Foods

(2008) S. Guenther et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacteriophage Isolated from Feedlot Cattle Can Reduce Escherichia coli O157:H7 Populations in Ruminant Gastrointestinal Tracts

(2008) Todd R. Callaway et al.   Foodborne Pathogens and Disease