Scalable generalized median graph estimation and its manifold use in bioinformatics, clustering, classification, and indexing

Upper Bounding the Graph Edit Distance Based on Rings and Machine Learning

(2021) David B. Blumenthal et al.   INTERNATIONAL JOURNAL OF PATTERN RECOGNITION AND ARTIFICIAL INTELLIGENCE

Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels

(2020) Mohammad Tauqeer Alam et al.   Gut Pathogens

Integrated microbiota and metabolite profiles link Crohn’s disease to sulfur metabolism

(2020) Amira Metwaly et al.   Nature Communications

Difficulty in inferring microbial community structure based on co-occurrence network approaches

(2019) Hokuto Hirano et al.   BMC BIOINFORMATICS

Microbial genes and pathways in inflammatory bowel disease

(2019) Melanie Schirmer et al.   NATURE REVIEWS MICROBIOLOGY

Comparing heuristics for graph edit distance computation

(2019) David B. Blumenthal et al.   VLDB JOURNAL

Improved local search for graph edit distance

(2019) Nicolas Boria et al.   PATTERN RECOGNITION LETTERS

Improved Lower Bounds for Graph Edit Distance

(2018) David B. Blumenthal et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Graph embedding techniques, applications, and performance: A survey

(2018) Palash Goyal et al.   KNOWLEDGE-BASED SYSTEMS

On the exact computation of the graph edit distance

(2018) David B. Blumenthal et al.   PATTERN RECOGNITION LETTERS

Gut microbiome and type 2 diabetes: where we are and where to go?

(2018) Sapna Sharma et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Gut microbiome structure and metabolic activity in inflammatory bowel disease

(2018) Eric A. Franzosa et al.   Nature Microbiology

Fuzzy generalized median graphs computation: Application to content-based document retrieval

(2017) Ramzi Chaieb et al.   PATTERN RECOGNITION

Graph edit distance as a quadratic assignment problem

(2017) Sébastien Bougleux et al.   PATTERN RECOGNITION LETTERS

Efficient structure similarity searches: a partition-based approach

(2017) Xiang Zhao et al.   VLDB JOURNAL

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Heuristics for the generalized median graph problem

(2016) Leonardo M. Musmanno et al.   EUROPEAN JOURNAL OF OPERATIONAL RESEARCH

Statistical graph space analysis

(2016) Brijnesh J. Jain   PATTERN RECOGNITION

CCLasso: correlation inference for compositional data through Lasso

(2015) Huaying Fang et al.   BIOINFORMATICS

Investigating microbial co-occurrence patterns based on metagenomic compositional data

(2015) Yuguang Ban et al.   BIOINFORMATICS

Efficient Graph Similarity Search Over Large Graph Databases

(2015) Weiguo Zheng et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

A new iterative algorithm for computing a quality approximate median of strings based on edit operations

(2013) J. Abreu et al.   PATTERN RECOGNITION LETTERS

Efficient processing of graph similarity queries with edit distance constraints

(2013) Xiang Zhao et al.   VLDB JOURNAL

The maximum common edge subgraph problem: A polyhedral investigation

(2012) Laura Bahiense et al.   DISCRETE APPLIED MATHEMATICS

A Hybrid Classification Model for Digital Pathology Using Structural and Statistical Pattern Recognition

(2012) Erdem Ozdemir et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

A generic framework for median graph computation based on a recursive embedding approach

(2011) M. Ferrer et al.   COMPUTER VISION AND IMAGE UNDERSTANDING

Models and algorithms for computing the common labelling of a set of attributed graphs

(2011) Albert Solé-Ribalta et al.   COMPUTER VISION AND IMAGE UNDERSTANDING

Efficiently Indexing Large Sparse Graphs for Similarity Search

(2010) Guoren Wang et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Median graphs: A genetic approach based on new theoretical properties

(2009) M. Ferrer et al.   PATTERN RECOGNITION

Generalized median graph computation by means of graph embedding in vector spaces

(2009) M. Ferrer et al.   PATTERN RECOGNITION

Median graph: A new exact algorithm using a distance based on the maximum common subgraph

(2009) M. Ferrer et al.   PATTERN RECOGNITION LETTERS

On the point for which the sum of the distances to n given points is minimum

(2008) E. Weiszfeld et al.   ANNALS OF OPERATIONS RESEARCH

A simple and fast algorithm for K-medoids clustering

(2008) Hae-Sang Park et al.   EXPERT SYSTEMS WITH APPLICATIONS

Generalized median graphs and applications

(2008) Lopamudra Mukherjee et al.   JOURNAL OF COMBINATORIAL OPTIMIZATION