Recent progress on the mutations of SARS-CoV-2 spike protein and suggestions for prevention and controlling of the pandemic

AXL is a candidate receptor for SARS-CoV-2 that promotes infection of pulmonary and bronchial epithelial cells

(2021) Shuai Wang et al.   CELL RESEARCH

Two-step strategy for the identification of SARS-CoV-2 variant of concern 202012/01 and other variants with spike deletion H69–V70, France, August to December 2020

(2021) Antonin Bal et al.   Eurosurveillance

Early transmissibility assessment of the N501Y mutant strains of SARS-CoV-2 in the United Kingdom, October to November 2020

(2021) Kathy Leung et al.   Eurosurveillance

Gut microbiota composition reflects disease severity and dysfunctional immune responses in patients with COVID-19

(2021) Yun Kit Yeoh et al.   GUT

SARS‐CoV‐2, the pandemic coronavirus: Molecular and structural insights

(2021) Swapnil B. Kadam et al.   JOURNAL OF BASIC MICROBIOLOGY

Prospective mapping of viral mutations that escape antibodies used to treat COVID-19

(2021) Tyler N. Starr et al.   SCIENCE

SARS-CoV-2 spillover events

(2021) Peng Zhou et al.   SCIENCE

Structure-guided multivalent nanobodies block SARS-CoV-2 infection and suppress mutational escape

(2021) Paul-Albert Koenig et al.   SCIENCE

Immunological characteristics govern the transition of COVID-19 to endemicity

(2021) Jennie S. Lavine et al.   SCIENCE

Biological and Clinical Consequences of Integrin Binding via a Rogue RGD Motif in the SARS CoV-2 Spike Protein

(2021) Lee Makowski et al.   Viruses-Basel

No higher infectivity but immune escape of SARS-CoV-2 501Y.V2 variants

(2021) Qianqian Li et al.   CELL

Reduced neutralization of SARS-CoV-2 B.1.1.7 variant by convalescent and vaccine sera

(2021) Piyada Supasa et al.   CELL

Evidence of escape of SARS-CoV-2 variant B.1.351 from natural and vaccine induced sera

(2021) Daming Zhou et al.   CELL

SARS-CoV-2 spike D614G change enhances replication and transmission

(2021) Bin Zhou et al.   NATURE

Antibody Resistance of SARS-CoV-2 Variants B.1.351 and B.1.1.7

(2021) Pengfei Wang et al.   NATURE

SARS-CoV-2 evolution during treatment of chronic infection

(2021) Steven A. Kemp et al.   NATURE

Resistance of SARS-CoV-2 variants to neutralization by monoclonal and serum-derived polyclonal antibodies

(2021) Rita E. Chen et al.   NATURE MEDICINE

SARS-CoV-2 501Y.V2 escapes neutralization by South African COVID-19 donor plasma

(2021) Constantinos Kurt Wibmer et al.   NATURE MEDICINE

Sixteen novel lineages of SARS-CoV-2 in South Africa

(2021) Houriiyah Tegally et al.   NATURE MEDICINE

Neutralization of SARS-CoV-2 spike 69/70 deletion, E484K and N501Y variants by BNT162b2 vaccine-elicited sera

(2021) Xuping Xie et al.   NATURE MEDICINE

Transmission of SARS-CoV-2 via fomite, especially cold chain, should not be ignored

(2021) Weilong Ji et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut microbiota in antiviral strategy from bats to humans: a missing link in COVID-19

(2021) Jia Luo et al.   Science China-Life Sciences

Bat and pangolin coronavirus spike glycoprotein structures provide insights into SARS-CoV-2 evolution

(2021) Shuyuan Zhang et al.   Nature Communications

SARS-CoV-2 D614G spike mutation increases entry efficiency with enhanced ACE2-binding affinity

(2021) Seiya Ozono et al.   Nature Communications

The Spike D614G mutation increases SARS-CoV-2 infection of multiple human cell types

(2021) Zharko Daniloski et al.   eLife

The human pandemic coronaviruses on the show: The spike glycoprotein as the main actor in the coronaviruses play

(2021) Pedro F.N. Souza et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Is there a need to widely prescribe antibiotics in patients hospitalized with COVID-19?

(2021) F. Moretto et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Bispecific IgG neutralizes SARS-CoV-2 variants and prevents escape in mice

(2021) Raoul De Gasparo et al.   NATURE

Escape of SARS-CoV-2 501Y.V2 from neutralization by convalescent plasma

(2021) Sandile Cele et al.   NATURE

The emerging plasticity of SARS-CoV-2

(2021) Kevin D. McCormick et al.   SCIENCE

SARS-CoV-2 can recruit a haem metabolite to evade antibody immunity

(2021) Annachiara Rosa et al.   Science Advances

Lactiplantibacillus plantarum as a Potential Adjuvant and Delivery System for the Development of SARS-CoV-2 Oral Vaccines

(2021) Julio Villena et al.   Microorganisms

SARS-CoV-2 mutation 614G creates an elastase cleavage site enhancing its spread in high AAT-deficient regions

(2021) Chandrika Bhattacharyya et al.   INFECTION GENETICS AND EVOLUTION

Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding

(2020) Roujian Lu et al.   LANCET

Structural Proteins in Severe Acute Respiratory Syndrome Coronavirus-2

(2020) Sairaj Satarker et al.   ARCHIVES OF MEDICAL RESEARCH

A recombinant Lactobacillus plantarum strain expressing the spike protein of SARS-CoV-2

(2020) Maopeng Wang et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Comparison of SARS-CoV-2 spike protein binding to ACE2 receptors from human, pets, farm animals, and putative intermediate hosts

(2020) Xiaofeng Zhai et al.   JOURNAL OF VIROLOGY

Genomic epidemiology, evolution, and transmission dynamics of porcine deltacoronavirus

(2020) Wan-Ting He et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cell entry mechanisms of SARS-CoV-2

(2020) Jian Shang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent progress on the diagnosis of 2019 Novel Coronavirus

(2020) Chun Li et al.   Transboundary and Emerging Diseases

COVID-19: Epidemiology, Evolution, and Cross-Disciplinary Perspectives

(2020) Jiumeng Sun et al.   TRENDS IN MOLECULAR MEDICINE

A Unique Protease Cleavage Site Predicted in the Spike Protein of the Novel Pneumonia Coronavirus (2019-nCoV) Potentially Related to Viral Transmissibility

(2020) Qiong Wang et al.   VIROLOGICA SINICA

Structural and functional properties of SARS-CoV-2 spike protein: potential antivirus drug development for COVID-19

(2020) Yuan Huang et al.   ACTA PHARMACOLOGICA SINICA

Making Sense of Mutation: What D614G Means for the COVID-19 Pandemic Remains Unclear

(2020) Nathan D. Grubaugh et al.   CELL

Protein structure analysis of the interactions between SARS-CoV-2 spike protein and the human ACE2 receptor: from conformational changes to novel neutralizing antibodies

(2020) Ivan Mercurio et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species

(2020) Chun Li et al.   INFECTION GENETICS AND EVOLUTION

Genetic comparison among various coronavirus strains for the identification of potential vaccine targets of SARS-CoV2

(2020) Navpreet Kaur et al.   INFECTION GENETICS AND EVOLUTION

Potent neutralizing antibodies against multiple epitopes on SARS-CoV-2 spike

(2020) Lihong Liu et al.   NATURE

Higher binding affinity of Furin to SARS-CoV-2 spike (S) protein D614G could be associated with higher SARS-CoV-2 infectivity

(2020) Anwar Mohammad et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Detection of SARS-CoV-2 in a cat owned by a COVID-19−affected patient in Spain

(2020) Joaquim Segalés et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Low genetic diversity may be an Achilles heel of SARS-CoV-2

(2020) Jason W. Rausch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

(2020) Joana Damas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental infection of domestic dogs and cats with SARS-CoV-2: Pathogenesis, transmission, and response to reexposure in cats

(2020) Angela M. Bosco-Lauth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In situ structural analysis of SARS-CoV-2 spike reveals flexibility mediated by three hinges

(2020) Beata Turoňová et al.   SCIENCE

Neuropilin-1 is a host factor for SARS-CoV-2 infection

(2020) James L. Daly et al.   SCIENCE

Neuropilin-1 facilitates SARS-CoV-2 cell entry and infectivity

(2020) Ludovico Cantuti-Castelvetri et al.   SCIENCE

COVID-19 pandemic: current knowledge about the role of pets and other animals in disease transmission

(2020) Mulugeta Kiros et al.   Virology Journal

Antiviral mechanisms of candidate chemical medicines and traditional Chinese medicines for SARS-CoV-2 infection

(2020) Chang Li et al.   VIRUS RESEARCH

Role of the GTNGTKR motif in the N-terminal receptor-binding domain of the SARS-CoV-2 spike protein

(2020) Nouredine Behloul et al.   VIRUS RESEARCH

Host Immune Response Driving SARS-CoV-2 Evolution

(2020) Rui Wang et al.   Viruses-Basel

Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide

(2020) Sandra Isabel et al.   Scientific Reports

A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors

(2020) Manvendra Singh et al.   Cell Reports

Comparative Review of SARS-CoV-2, SARS-CoV, MERS-CoV, and Influenza A Respiratory Viruses

(2020) Zeinab Abdelrahman et al.   Frontiers in Immunology

Broad host range of SARS-CoV-2 and the molecular basis for SARS-CoV-2 binding to cat ACE2

(2020) Lili Wu et al.   Cell Discovery

A Crowned Killer’s Résumé: Genome, Structure, Receptors, and Origin of SARS-CoV-2

(2020) Shichuan Wang et al.   VIROLOGICA SINICA

Persistence and decay of human antibody responses to the receptor binding domain of SARS-CoV-2 spike protein in COVID-19 patients

(2020) Anita S. Iyer et al.   Science Immunology

The structural basis of accelerated host cell entry by SARS‐CoV‐2†

(2020) Murat Seyran et al.   FEBS Journal

Persistence and Evolution of SARS-CoV-2 in an Immunocompromised Host

(2020) Bina Choi et al.   NEW ENGLAND JOURNAL OF MEDICINE

Enhanced SARS-CoV-2 neutralization by dimeric IgA

(2020) Zijun Wang et al.   Science Translational Medicine

Gastrointestinal symptoms associated with COVID-19: impact on the gut microbiome

(2020) Sonia Villapol   Translational Research

SARS-CoV-2 spike-protein D614G mutation increases virion spike density and infectivity

(2020) Lizhou Zhang et al.   Nature Communications

D614G Mutation Alters SARS-CoV-2 Spike Conformation and Enhances Protease Cleavage at the S1/S2 Junction

(2020) Sophie M.-C. Gobeil et al.   Cell Reports

SARS-CoV-2: Structure, Biology, and Structure-Based Therapeutics Development

(2020) Mei-Yue Wang et al.   Frontiers in Cellular and Infection Microbiology

Bioinformatics prediction of B and T cell epitopes within the spike and nucleocapsid proteins of SARS-CoV2

(2020) Reham M. Dawood et al.   Journal of Infection and Public Health

Molecular Evolution of Human Coronavirus Genomes

(2017) Diego Forni et al.   TRENDS IN MICROBIOLOGY

Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses

(2016) Shuo Su et al.   TRENDS IN MICROBIOLOGY

Pseudorabies virus can escape from CRISPR-Cas9-mediated inhibition

(2016) Zhiyuan Peng et al.   VIRUS RESEARCH