Phylogenetic relationship and genomic characterization of Salmonella Typhimurium strains isolated from swine in Brazil

Insights about the epidemiology of Salmonella Typhimurium isolates from different sources in Brazil using comparative genomics

(2021) Amanda Ap. Seribelli et al.   Gut Pathogens

ResFinder 4.0 for predictions of phenotypes from genotypes

(2020) Valeria Bortolaia et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Frequency of Antimicrobial Resistance Genes in Salmonella From Brazil by in silico Whole-Genome Sequencing Analysis: An Overview of the Last Four Decades

(2020) Grazielle Lima Rodrigues et al.   Frontiers in Microbiology

LoiA directly represses lon gene expression to activate the expression of Salmonella pathogenicity island-1 genes

(2019) Lingyan Jiang et al.   RESEARCH IN MICROBIOLOGY

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

(2019) Ling Xu et al.   NUCLEIC ACIDS RESEARCH

Antibiotic Resistance in Salmonella Typhimurium Isolates Recovered From the Food Chain Through National Antimicrobial Resistance Monitoring System Between 1996 and 2016

(2019) Xuchu Wang et al.   Frontiers in Microbiology

Genomic Features of High-Priority Salmonella enterica Serovars Circulating in the Food Production Chain, Brazil, 2000–2016

(2019) Daniel F. Monte et al.   Scientific Reports

Host Cell Death Responses to Non-typhoidal Salmonella Infection

(2019) Madeleine A. Wemyss et al.   Frontiers in Immunology

Virulence Factors in Salmonella Typhimurium: The Sagacity of a Bacterium

(2018) Anamaria M. P. dos Santos et al.   CURRENT MICROBIOLOGY

Evaluation of WGS based approaches for investigating a food-borne outbreak caused by Salmonella enterica serovar Derby in Germany

(2018) Sandra Simon et al.   FOOD MICROBIOLOGY

A genomic overview of the population structure of Salmonella

(2018) Nabil-Fareed Alikhan et al.   PLoS Genetics

Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing

(2018) Fernanda Almeida et al.   PLoS One

Virulence-associated genes, antimicrobial resistance and molecular typing ofSalmonellaTyphimurium strains isolated from swine from 2000 to 2012 in Brazil

(2016) F. Almeida et al.   JOURNAL OF APPLIED MICROBIOLOGY

PGAdb-builder: A web service tool for creating pan-genome allele database for molecular fine typing

(2016) Yen-Yi Liu et al.   Scientific Reports

Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?

(2016) Louise Roer et al.   mSystems

MeDuSa: a multi-draft based scaffolder

(2015) Emanuele Bosi et al.   BIOINFORMATICS

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

(2014) David Coil et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Salmonella–Host Interactions – Modulation of the Host Innate Immune System

(2014) Daniel Hurley et al.   Frontiers in Immunology

Genotypic diversity and virulence markers ofYersinia enterocoliticabiotype 1A strains isolated from clinical and non-clinical origins

(2013) Fábio Campioni et al.   APMIS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

GapFiller: a de novo assembly approach to fill the gap within paired reads

(2012) Francesca Nadalin et al.   BMC BIOINFORMATICS

Type III effector-mediated processes inSalmonellainfection

(2012) Joris van der Heijden et al.   Future Microbiology

Efficient de novo assembly of large genomes using compressed data structures

(2011) J. T. Simpson et al.   GENOME RESEARCH

Interactive microbial genome visualization with GView

(2010) Aaron Petkau et al.   BIOINFORMATICS

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Salmonella- the ultimate insider.Salmonellavirulence factors that modulate intracellular survival

(2009) J. Antonio Ibarra et al.   CELLULAR MICROBIOLOGY