Metabolic potential and survival strategies of microbial communities across extreme temperature gradients on Deception Island volcano, Antarctica

Artificial construction of the biocoenosis of deep‐sea ecosystem via seeping methane

(2020) Xumei Sun et al.   ENVIRONMENTAL MICROBIOLOGY

Deciphering the evolution of Deception Island’s magmatic system

(2019) A. Geyer et al.   Scientific Reports

The microbiomes of deep-sea hydrothermal vents: distributed globally, shaped locally

(2019) Gregory J. Dick   NATURE REVIEWS MICROBIOLOGY

Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa

(2019) Elizabeth Trembath-Reichert et al.   ISME Journal

Living at the Extremes: Extremophiles and the Limits of Life in a Planetary Context

(2019) Nancy Merino et al.   Frontiers in Microbiology

Biomarker Profiling of Microbial Mats in the Geothermal Band of Cerro Caliente, Deception Island (Antarctica): Life at the Edge of Heat and cold

(2019) María Ángeles Lezcano et al.   ASTROBIOLOGY

The Evolution of Reverse Gyrase Suggests a Nonhyperthermophilic Last Universal Common Ancestor

(2019) Ryan J Catchpole et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome‐resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep‐sea hydrothermal vents

(2019) David Galambos et al.   ENVIRONMENTAL MICROBIOLOGY

Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow?

(2019) Benoît Bergk Pinto et al.   Frontiers in Microbiology

Unveiling resistome profiles in the sediments of an Antarctic volcanic island

(2019) V.B. Centurion et al.   ENVIRONMENTAL POLLUTION

Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience

(2018) Dinka Mandakovic et al.   Scientific Reports

A Mosaic of Geothermal and Marine Features Shapes Microbial Community Structure on Deception Island Volcano, Antarctica

(2018) Amanda G. Bendia et al.   Frontiers in Microbiology

Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome

(2018) Sophie S. Abby et al.   Frontiers in Microbiology

Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland

(2018) Anne Daebeler et al.   Frontiers in Microbiology

Surviving in hot and cold: psychrophiles and thermophiles from Deception Island volcano, Antarctica

(2018) Amanda G. Bendia et al.   EXTREMOPHILES

Diversity of bacteria and archaea from two shallow marine hydrothermal vents from Vulcano Island

(2017) Garabed Antranikian et al.   EXTREMOPHILES

Microbial community dynamics in Inferno Crater Lake, a thermally fluctuating geothermal spring

(2017) Laura Ward et al.   ISME Journal

A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer

(2017) Benjamin J Tully et al.   ISME Journal

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

(2017) Robert M Bowers et al.   NATURE BIOTECHNOLOGY

Comparative metagenomics reveals insights into the deep-sea adaptation mechanism of the microorganisms in Iheya hydrothermal fields

(2017) Hai-liang Wang et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Functional redundancy modifies species-area relationship for freshwater phytoplankton

(2017) Gábor Várbíró et al.   Ecology and Evolution

Temperature affects microbial abundance, activity and interactions in anaerobic digestion

(2016) Qiang Lin et al.   BIORESOURCE TECHNOLOGY

Subseafloor microbial communities in hydrogen-rich vent fluids from hydrothermal systems along the Mid-Cayman Rise

(2016) Julie Reveillaud et al.   ENVIRONMENTAL MICROBIOLOGY

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Taxonomic and Functional Diversity of Soil and Hypolithic Microbial Communities in Miers Valley, McMurdo Dry Valleys, Antarctica

(2016) Sean T. S. Wei et al.   Frontiers in Microbiology

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Prediction of microbial phenotypes based on comparative genomics

(2015) Roman Feldbauer et al.   BMC BIOINFORMATICS

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Microbial ecology of the cryosphere: sea ice and glacial habitats

(2015) Antje Boetius et al.   NATURE REVIEWS MICROBIOLOGY

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Humboldt’s spa: microbial diversity is controlled by temperature in geothermal environments

(2014) Christine E Sharp et al.   ISME Journal

Volcanic hazard on Deception Island (South Shetland Islands, Antarctica)

(2014) S. Bartolini et al.   JOURNAL OF VOLCANOLOGY AND GEOTHERMAL RESEARCH

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

Reverse gyrase—recent advances and current mechanistic understanding of positive DNA supercoiling

(2014) Pavel Lulchev et al.   NUCLEIC ACIDS RESEARCH

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

(2012) Andreas Wilke et al.   BMC BIOINFORMATICS

Prokaryotic diversity in sediments beneath two polar glaciers with contrasting organic carbon substrates

(2012) Marek Stibal et al.   EXTREMOPHILES

Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities

(2012) Jessica K Cole et al.   ISME Journal

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Archaeal diversity from hydrothermal systems of Deception Island, Antarctica

(2012) Maximiliano J. Amenábar et al.   POLAR BIOLOGY

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Thermophilic bacteria present in a sample from Fumarole Bay, Deception Island

(2011) Patricio A. Muñoz et al.   ANTARCTIC SCIENCE

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Pseudomonas deceptionensis sp. nov., a psychrotolerant bacterium from the Antarctic

(2010) O. Carrion et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries

(2010) Wei Xie et al.   ISME Journal

The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses

(2010) Etienne Yergeau et al.   ISME Journal

The large-scale organization of the bacterial network of ecological co-occurrence interactions

(2010) Shiri Freilich et al.   NUCLEIC ACIDS RESEARCH

Glacier ecosystem response to episodic nitrogen enrichment in Svalbard, European High Arctic

(2009) Andy Hodson et al.   BIOGEOCHEMISTRY

IMG ER: a system for microbial genome annotation expert review and curation

(2009) Victor M. Markowitz et al.   BIOINFORMATICS

The core gut microbiome, energy balance and obesity

(2009) Peter J. Turnbaugh et al.   JOURNAL OF PHYSIOLOGY-LONDON

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol

(2008) José R. de la Torre et al.   ENVIRONMENTAL MICROBIOLOGY