The role of ontologies in biological and biomedical research: a functional perspective
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Title
The role of ontologies in biological and biomedical research: a functional perspective
Authors
Keywords
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Journal
BRIEFINGS IN BIOINFORMATICS
Volume 16, Issue 6, Pages 1069-1080
Publisher
Oxford University Press (OUP)
Online
2015-04-12
DOI
10.1093/bib/bbv011
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Note: Only part of the references are listed.- AISO: Annotation of Image Segments with Ontologies
- (2015) Nikhil Lingutla et al. Journal of Biomedical Semantics
- Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters
- (2014) Christopher Funk et al. BMC BIOINFORMATICS
- OMIT: Dynamic, Semi-Automated Ontology Development for the microRNA Domain
- (2014) Jingshan Huang et al. PLoS One
- Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome
- (2014) T. Zemojtel et al. Science Translational Medicine
- Overview of the gene ontology task at BioCreative IV
- (2014) Y. Mao et al. Database-The Journal of Biological Databases and Curation
- Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex
- (2014) James P Balhoff et al. Journal of Biomedical Semantics
- Evolving BioAssay Ontology (BAO): modularization, integration and applications
- (2014) Saminda Abeyruwan et al. Journal of Biomedical Semantics
- The semantic measures library and toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies
- (2013) S. Harispe et al. BIOINFORMATICS
- Brain: biomedical knowledge manipulation
- (2013) Samuel Croset et al. BIOINFORMATICS
- XperimentR: painless annotation of a biological experiment for the laboratory scientist
- (2013) Chris D Tomlinson et al. BMC BIOINFORMATICS
- Mojo Hand, a TALEN design tool for genome editing applications
- (2013) Kevin L Neff et al. BMC BIOINFORMATICS
- PhenoTips: Patient Phenotyping Software for Clinical and Research Use
- (2013) Marta Girdea et al. HUMAN MUTATION
- The Incredible ELK
- (2013) Yevgeny Kazakov et al. JOURNAL OF AUTOMATED REASONING
- Semantator: Semantic annotator for converting biomedical text to linked data
- (2013) Cui Tao et al. JOURNAL OF BIOMEDICAL INFORMATICS
- Analyzing gene expression data in mice with the Neuro Behavior Ontology
- (2013) Robert Hoehndorf et al. MAMMALIAN GENOME
- A large-scale evaluation of computational protein function prediction
- (2013) Predrag Radivojac et al. NATURE METHODS
- The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data
- (2013) Gautier Koscielny et al. NUCLEIC ACIDS RESEARCH
- Evaluation and Cross-Comparison of Lexical Entities of Biological Interest (LexEBI)
- (2013) Dietrich Rebholz-Schuhmann et al. PLoS One
- An integrative, translational approach to understanding rare and orphan genetically based diseases
- (2013) R. Hoehndorf et al. Interface Focus
- NCBO Technology: Powering semantically aware applications
- (2013) Patricia L Whetzel et al. Journal of Biomedical Semantics
- Evaluation of research in biomedical ontologies
- (2012) R. Hoehndorf et al. BRIEFINGS IN BIOINFORMATICS
- Towards an encyclopaedia of mammalian gene function: the International Mouse Phenotyping Consortium
- (2012) S. D. M. Brown et al. Disease Models & Mechanisms
- 500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton
- (2012) P. Mabee et al. JOURNAL OF APPLIED ICHTHYOLOGY
- A gene ontology inferred from molecular networks
- (2012) Janusz Dutkowski et al. NATURE BIOTECHNOLOGY
- Text-mining solutions for biomedical research: enabling integrative biology
- (2012) Dietrich Rebholz-Schuhmann et al. NATURE REVIEWS GENETICS
- Gene Ontology Annotations and Resources
- (2012) NUCLEIC ACIDS RESEARCH
- Chapter 13: Mining Electronic Health Records in the Genomics Era
- (2012) Joshua C. Denny PLoS Computational Biology
- Uberon, an integrative multi-species anatomy ontology
- (2012) Christopher J Mungall et al. GENOME BIOLOGY
- Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank
- (2012) Jyotishman Pathak et al. Journal of Biomedical Semantics
- A common layer of interoperability for biomedical ontologies based on OWL EL
- (2011) R. Hoehndorf et al. BIOINFORMATICS
- IntelliGO: a new vector-based semantic similarity measure including annotation origin
- (2011) Sidahmed Benabderrahmane et al. BMC BIOINFORMATICS
- Integrating systems biology models and biomedical ontologies
- (2011) Robert Hoehndorf et al. BMC Systems Biology
- Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
- (2011) P. Gaudet et al. BRIEFINGS IN BIOINFORMATICS
- The National Center for Biomedical Ontology
- (2011) Mark A Musen et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- PhenomeNET: a whole-phenome approach to disease gene discovery
- (2011) R. Hoehndorf et al. NUCLEIC ACIDS RESEARCH
- Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning
- (2011) Robert Hoehndorf et al. PLoS One
- Interoperability between phenotype and anatomy ontologies
- (2010) R. Hoehndorf et al. BIOINFORMATICS
- Cytoscape 2.8: new features for data integration and network visualization
- (2010) M. E. Smoot et al. BIOINFORMATICS
- Relations as patterns: bridging the gap between OBO and OWL
- (2010) Robert Hoehndorf et al. BMC BIOINFORMATICS
- The BioPAX community standard for pathway data sharing
- (2010) Emek Demir et al. NATURE BIOTECHNOLOGY
- Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature
- (2010) Wasila M. Dahdul et al. PLoS One
- Semantic Similarity for Automatic Classification of Chemical Compounds
- (2010) João D. Ferreira et al. PLoS Computational Biology
- Integrating phenotype ontologies across multiple species
- (2010) Christopher J Mungall et al. GENOME BIOLOGY
- HIERARCHICAL CLASSIFICATION OF GENE ONTOLOGY TERMS USING THE GOstruct METHOD
- (2010) ARTEM SOKOLOV et al. Journal of Bioinformatics and Computational Biology
- Clinical Diagnostics in Human Genetics with Semantic Similarity Searches in Ontologies
- (2009) Sebastian Köhler et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Ontology quality assurance through analysis of term transformations
- (2009) K. Verspoor et al. BIOINFORMATICS
- The ontology of biological sequences
- (2009) Robert Hoehndorf et al. BMC BIOINFORMATICS
- FunSimMat update: new features for exploring functional similarity
- (2009) Andreas Schlicker et al. NUCLEIC ACIDS RESEARCH
- BioPortal: ontologies and integrated data resources at the click of a mouse
- (2009) N. F. Noy et al. NUCLEIC ACIDS RESEARCH
- Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation
- (2009) Nicole L. Washington et al. PLOS BIOLOGY
- Semantic Similarity in Biomedical Ontologies
- (2009) Catia Pesquita et al. PLoS Computational Biology
- AmiGO: online access to ontology and annotation data
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- OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression
- (2008) Lawrence Hunter et al. BMC BIOINFORMATICS
- Forty years of SNOMED: a literature review
- (2008) Ronald Cornet et al. BMC Medical Informatics and Decision Making
- Drug Target Identification Using Side-Effect Similarity
- (2008) M. Campillos et al. SCIENCE
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